Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3551 ATGGGAAGACACTCTTGCTGTTACAAGCAGAAACTAAGGAAAGGCCTCTGGTCTCCAGAGGAAGACGAGAAGCTTTTGAATTATATCACCAAGCATGGCCATGGATGTTGGAGCTCTGTCCCAAAACTTGCTGGTTTGCAGAGGTGTGGGAAGAGCTGTAGACTGAGGTGGATTAATTACCTTAGACCTGATTTGAAAAGAGGAGCATTCTCACAGCAGGAGGAGAACCTGATAATTGAACTCCATGCAGTCTTAGGCAACAGGTGGTCACAGATTGCAGCTCAGTTACCGGGAAGAACTGACAATGAGATAAAAAATCTATGGAATTCCTGCCTCAAGAAGAAGCTTAGGCAGAGAGGCATTGACCCAAACACCCACAAGCCACTCTCTGAGGTTGAGAACGACAAGGACAAGCCACCCGCAGCTGATAAAGGCAATCAGAAAGCCTCAGTGGGATCCAATGAACTGAGTCTTGCTGAACCAGCAAAACCAAAGCCAACCACAGTGCCCGCGGAGGGATACCCACTTGAAGTTTCTTCCAGCTCCAAGATCAACAATAGCAGCAGTAGCAGCAGCAATTTGACAAGCACCCCACCCACCCAGGACTTATTCCTAGATAGGTTCGGTGCCTGCCATGATAGCTCCATGACCAGTTGCAGACCTTCTGACATGGCGGGTTATTTCTCTTTTCAGCAGTTGAACTATGGACCGAATGCTGGGATCTCCGCCAATCTCAACAGCTCTCTTTGCTTCATATCAAGTTCCAGTTCTTCTCAGGTGATGTCAGAGCTTAATTCTAGTATGACTCCTGCTATGCTCCATTCTGTCTCAAACTCAATTTTCCCAACAACACATGTAAAGACCACTGTTAGTCTTCAGTCTAATAATCCTTCCATATCCTCTGGCGATATTGATGGGGTTCAGAACTGGGAAACTAGTACCTTCAGTAACAATGGAAGGAAAAGCAATGGAAGCAGTAGCAGTGTCCAATTACAAAGTAGCACTAGCTTCCTTGAGAACAACACTTTAGCATGGGGACTGGCAGAGTCTGTGAAGGCTGATAAAGATGCCCAGGTAATCTTACAAGCAGAAGAAGACATTAAATGGTCTGAGTATCTAAACACCCCATTTTTTCTGGGAAACACAGTACAGAATCAAACTTCTCAATCTATCTACAGTGAGGTTAAACCAGAAACAGGCTTCATAACAGACGAATCAAGTACTAGTTGGCACCTTAGCCAGCACCCACCCGTTTTTCAAGCTTCAGATATATACACTAAGGATCTGCAAAGATTTTCAGTGGCTTTTGGACAAACCCTTTAG 1323 0.452 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEVENDKDKPPAADKGNQKASVGSNELSLAEPAKPKPTTVPAEGYPLEVSSSSKINNSSSSSSNLTSTPPTQDLFLDRFGACHDSSMTSCRPSDMAGYFSFQQLNYGPNAGISANLNSSLCFISSSSSSQVMSELNSSMTPAMLHSVSNSIFPTTHVKTTVSLQSNNPSISSGDIDGVQNWETSTFSNNGRKSNGSSSSVQLQSSTSFLENNTLAWGLAESVKADKDAQVILQAEEDIKWSEYLNTPFFLGNTVQNQTSQSIYSEVKPETGFITDESSTSWHLSQHPPVFQASDIYTKDLQRFSVAFGQTL 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3551 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Glsi02g3551 440 Gene3D - 68 142 - -
Glsi02g3551 440 SMART sant 66 114 IPR001005 -
Glsi02g3551 440 SMART sant 13 63 IPR001005 -
Glsi02g3551 440 MobiDBLite consensus disorder prediction 119 143 - -
Glsi02g3551 440 MobiDBLite consensus disorder prediction 119 198 - -
Glsi02g3551 440 CDD SANT 17 61 IPR001005 -
Glsi02g3551 440 MobiDBLite consensus disorder prediction 174 198 - -
Glsi02g3551 440 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Glsi02g3551 440 FunFam Myb transcription factor 11 67 - -
Glsi02g3551 440 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi02g3551 440 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g3551 440 Gene3D - 11 67 - -
Glsi02g3551 440 PANTHER MYB DOMAIN PROTEIN 55 1 340 - -
Glsi02g3551 440 CDD SANT 69 109 IPR001005 -
Glsi02g3551 440 FunFam MYB transcription factor 68 140 - -
Glsi02g3551 440 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g3551 440 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g3551 440 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3551 Glsi-ChrGlsi02 82462152 82463723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3551 1 440 MYB Transcription Factor Family AT1G09540 47.473 1.30e-122 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3551 Myb_DNA-binding 3e-15 CL0123