Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3548 ATGGTTGTTGGGCTGGGTTTGACAAAGCTTTTAGCGGACAATGCCCCAAAAGCCATGAAGGAGCATAAATTTGAGAGCTACTTTGGCCGTAAAATTGCCATTGACGCCAGTATGAGCATCTATCAGTTCCTAATTGTCGTGGGAAGAAGTGGGACTGAGATGCTTACTAATGAGGCTGGTGAAGTTACTAGTCATTTGCAAGGCATGTTTTCACGGACAATCAGACTCCTAGAAGCCGGAATGAAGCCGCTATATGTTTTTGATGGGAAGCCACCAGATTTGAAGAAACAAGAGCTGGCCAAACGTTTTTCAAAGAGGGCTGATGCTAGCGAGGATCTGTCTGAAGCCATGGAGATTGGCAATAAGGAAGACATCGAGAAATTTAGTAAACGAACTGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTGATTGAGGCACCCTCAGAAGCAGAGGCACAGTGTGCAGTGCTTTGCAAATCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCATTAACGTTTGGAGCTCCTAAATTTCTTCGCCATTTAATGGATCCTAGCTCAAAGAAAGTACCAGTCATGGAATTTGAAGTTGCAAAGATTTTGGAGGAGCTAAATCTTACCATGGATCAGTTCATTGACTTATGCATTCTTTCTGGGTGTGACTATTGTGATAGCATTCGAGGGATTGGCGGACAAACTGCCTTGAAACTCATACGTCAACATGGTTCGATAGAGAATATACTGGAGAATATAAAAAAAGAGAGGTATCAGATACCAGATGATTGGCCATTTAAGGAGGCTCGGCAGCTTTTTAAAGAACCAGTAGTCTTAACTGAAGAGGAGCAACTTGATCTTAAGTGGACTGCTCCAGATGAAGAAGGTTTAATTACATTTTTGGTAAATGAGAATGGATTCAATGCAGATAGGGTGACAAAGGCAATAGAAAAGATTAAAGCAGCAAAGAACAAGTCCTCGCAAGGCCGGATGGAATCTTTTTTTAAGCCAGTGGTGAATTCATCCGCACCTATCAAACGCAAGGAAACACCAGAGAATAATGCTAAAGAGACTAACAAAAAGACAAAGGCCGGTAGTGGACCAAACCCAGAGACGAAGGCAGTTTCGCCTATTCATCATCTCTTTGTGGTTAGACTGTCTTTAAGATTCTTTGCACTTTGGTTAAGCTTTTCGGCCAAGCCATTTGAAAATGCCCCAATTGTTTACCATATCATATTAGAGAAAGCCAGTATTTCATCTGGGGAATATCAACAGAAAGACAATAATGCCATTGCGTTCTACGATTGA 1344 0.4189 MVVGLGLTKLLADNAPKAMKEHKFESYFGRKIAIDASMSIYQFLIVVGRSGTEMLTNEAGEVTSHLQGMFSRTIRLLEAGMKPLYVFDGKPPDLKKQELAKRFSKRADASEDLSEAMEIGNKEDIEKFSKRTVKVTKQHNEDCKRLLRLMGVPVIEAPSEAEAQCAVLCKSGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIENILENIKKERYQIPDDWPFKEARQLFKEPVVLTEEEQLDLKWTAPDEEGLITFLVNENGFNADRVTKAIEKIKAAKNKSSQGRMESFFKPVVNSSAPIKRKETPENNAKETNKKTKAGSGPNPETKAVSPIHHLFVVRLSLRFFALWLSFSAKPFENAPIVYHIILEKASISSGEYQQKDNNAIAFYD 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3548 447 SMART xpgn3 3 109 IPR006085 GO:0004518
Glsi02g3548 447 Pfam XPG N-terminal domain 6 108 IPR006085 GO:0004518
Glsi02g3548 447 Hamap Flap endonuclease 1 [fen]. 1 348 IPR023426 GO:0016788
Glsi02g3548 447 Gene3D - 224 287 - -
Glsi02g3548 447 FunFam Flap endonuclease 1 11 223 - -
Glsi02g3548 447 CDD PIN_FEN1 6 333 - -
Glsi02g3548 447 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 16 375 IPR006084 -
Glsi02g3548 447 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 350 IPR036279 -
Glsi02g3548 447 ProSitePatterns XPG protein signature 2. 151 165 IPR019974 GO:0016788
Glsi02g3548 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
Glsi02g3548 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 29 43 IPR006084 -
Glsi02g3548 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 83 102 IPR006084 -
Glsi02g3548 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 147 164 IPR006084 -
Glsi02g3548 447 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 168 188 IPR006084 -
Glsi02g3548 447 Pfam XPG I-region 151 235 IPR006086 GO:0004518
Glsi02g3548 447 MobiDBLite consensus disorder prediction 356 384 - -
Glsi02g3548 447 SMART xpgineu 148 220 IPR006086 GO:0004518
Glsi02g3548 447 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Glsi02g3548 447 SMART 53exo3 30 307 IPR002421 GO:0003677
Glsi02g3548 447 CDD H3TH_FEN1-Euk 223 291 - -
Glsi02g3548 447 FunFam Flap endonuclease 1 220 287 - -
Glsi02g3548 447 SUPERFAMILY PIN domain-like 6 235 IPR029060 -
Glsi02g3548 447 Gene3D - 11 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3548 Glsi-ChrGlsi02 82437296 82445461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3548 6 362 Core DNA Replication Machinery Family AT5G26680 86.275 0.0 659