Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3543 ATGGCGTGCAGGGAGCTTGGAAGAAAGAGAATATATATGAATTTTGCTAGAGCTCTGACTACAGTGCCATCTAGGCATGTGGTAAGGTCATGTTCTTCATGCTCCTTTGCCGCAAAATCCATTTATGCATCAGCAAGATACTTGCCTGGTAAAGAGTTCATAAGCCACTCATCTAATGGAGCAGCTGGTTTTTGCAATGGAACAAAAGAACATGGAATACAGTCCTTCCATTCTAGTCCAGAAGTCTGGGCAAGAAGAAATGAGATGTTTGGTTTGAAGACCCCAAAGAAGGAGAAGTATGTGAAAAGGGACAGTAAAAAGCAGCCTCCTGTTGACGCTCCATATGTTCCTCGTAATATGGTCAAATCTACCAAATCCAATCCTGATAAGACAATTGAAATATTTGAAGGCATAACCATTGTTGAGCTGGCAAAGCGTACTGGAAAGTCAGTATCTTCTCTACAGGATATTCTCATATATCTTGAGGAAAAGGTTGAATCAGAGTTTAAGCCTCTGAGCATTGATATTGCAGAGCTTGTTGCAATGGAAGTTGGTGTCAATGTTAAGAGGCTACACTCTGCTGAAGGTACAGAAATTGAAAAGCGTCCTGCAGTTGTAACAGTGATGGGTCATGTTGATCATGGTAAAACATCTCTTCTTGATGCTTTGCGTCAAACATCAGTGGCAGCCAAGGAGGCTGGAGGCATAACTCAGCATATAGGTGCCTTTGAGGTGATCATGCCATCAGAAGAATCAATGGAGCGATCAATCACTTTTCTTGATACCCCTGGTCATGCTGCATTTAGTGCAATGCGGGCAAGAGGTGCAGCAGTCACAGATATAGTAGTGCTTGTTGTTGCTGCAGATGATGGAGTAATGCCTCAAACACTTGAAGCCATAAACCATGCAAAAGCAGCTAACGTACCAATTGTAGTTGCAATTAATAAATGTGATAAACCAGGAGCAAATCCTGAAAGGGTAAAACAGCGGCTTGTAGAAGAGGGAGTACTGGTGGAGGATTGGGGTGGGGATGTTCAAGTGGTTGAAGTTTCTGCAACTATGAAAACTGGACTGGATAACTTGAAGTTAGCTTTGGCCCTTCAATCTGACATAATGAATCTGGAAGCTCGGAATGACGGGCCTGCTCAAGCATATGTGGTGGAAGCAAGACTTGACCAAGGACGAGGTCCATTAGCTACTGCTATAGTGAAGGCAGGGACGTTACTTTGTGGTCAGCATGTGGTTGTAGGCTCTGAATGGGGCAGAATAAGGGCTATTAGAGCAATGACAGGGATGTCCACTGACAAAGCAAAACCTGGAATGCCTGTTGAGATTGAAGGGCTTCGGGGGATTCCGATGGCTGGTGATGATGTTATTGTTGTTTATTCTGAGGAGCGAGCTCGACTGCTTAGTGCTGGTAGGAAAAGGAAATCTGAGAAGGATAGACTTAGGAGAATGATTCAGGATAAGACAGATTCTTTGGAATTACCTGACGATGTTCCTCTGAGGGTTGAAATGCCAATAATAGTAAAAGCAGATGTTCAGGGCACTGCTCAAGCTGTCACAGATGCATTGAGAACTTTAAATAGTCCTCAGGTTCTCGTGAACGTCGTCCATGTTGGTGTGGGGTCTATTTCTCAATCTGACGTGGACCTAGCACAGGCTTGTGGTGCATGTATAGTTGGATTCAATGTGAAGAGTTCGCCTAGTTCTGTTAGTCAGGAAGCAACTCGCGCCAATATAAAGATAGTGCTGCACCGCGTGATTTACCACCTCTTGGAGGACATAGGCAATTTGATAGTAGAAAAGGCTCCGGGGACTTTCGAGACCCAGGTAGCGGGGGAGGCAGAGGTGCTGAATATCTTTGAGCGTAAAGGGAGGAGCAGGTACAAGGGACCCGACTTCAAGATAGCTGGTTGTAAGGTTATTGATGGTTGTGTGAGCAAATCAGGAACAATGAGGGTTCTGAGGAGTGGGAAAGTGGCGTTTGAAGGACAATGTGCATCTCTGAAGAGGGAACAGCGGGATGTGGAGACAGTGAAGAAGGGAAATGAGTGTGGGCTTGTAATAAGTGATTGGCAAGATTTCCAGGTTGGAGACGTCATACAGTGCTTGGAACAAGTGGTGAGGAAGCCCAAGTTCATCAAGTCAGAGGGTGGTGCTGTTCGAATTGAGTGCTGA 2181 0.4503 MACRELGRKRIYMNFARALTTVPSRHVVRSCSSCSFAAKSIYASARYLPGKEFISHSSNGAAGFCNGTKEHGIQSFHSSPEVWARRNEMFGLKTPKKEKYVKRDSKKQPPVDAPYVPRNMVKSTKSNPDKTIEIFEGITIVELAKRTGKSVSSLQDILIYLEEKVESEFKPLSIDIAELVAMEVGVNVKRLHSAEGTEIEKRPAVVTVMGHVDHGKTSLLDALRQTSVAAKEAGGITQHIGAFEVIMPSEESMERSITFLDTPGHAAFSAMRARGAAVTDIVVLVVAADDGVMPQTLEAINHAKAANVPIVVAINKCDKPGANPERVKQRLVEEGVLVEDWGGDVQVVEVSATMKTGLDNLKLALALQSDIMNLEARNDGPAQAYVVEARLDQGRGPLATAIVKAGTLLCGQHVVVGSEWGRIRAIRAMTGMSTDKAKPGMPVEIEGLRGIPMAGDDVIVVYSEERARLLSAGRKRKSEKDRLRRMIQDKTDSLELPDDVPLRVEMPIIVKADVQGTAQAVTDALRTLNSPQVLVNVVHVGVGSISQSDVDLAQACGACIVGFNVKSSPSSVSQEATRANIKIVLHRVIYHLLEDIGNLIVEKAPGTFETQVAGEAEVLNIFERKGRSRYKGPDFKIAGCKVIDGCVSKSGTMRVLRSGKVAFEGQCASLKREQRDVETVKKGNECGLVISDWQDFQVGDVIQCLEQVVRKPKFIKSEGGAVRIEC 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3543 726 NCBIfam translation initiation factor IF-2 129 709 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Glsi02g3543 726 CDD mtIF2_IVc 614 704 - -
Glsi02g3543 726 PRINTS GTP-binding elongation factor signature 310 319 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 PRINTS GTP-binding elongation factor signature 258 268 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 PRINTS GTP-binding elongation factor signature 205 218 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 PRINTS GTP-binding elongation factor signature 274 285 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 MobiDBLite consensus disorder prediction 98 124 - -
Glsi02g3543 726 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 201 375 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 Gene3D - 198 377 IPR027417 -
Glsi02g3543 726 Gene3D Translation factors 608 711 - -
Glsi02g3543 726 PANTHER TRANSLATION INITIATION FACTOR IF-2-RELATED 119 718 IPR015760 -
Glsi02g3543 726 FunFam Translation initiation factor IF-2 503 608 - -
Glsi02g3543 726 FunFam Translation initiation factor IF-2 198 377 - -
Glsi02g3543 726 Hamap Translation initiation factor IF-2 [infB]. 8 712 IPR000178 GO:0003743|GO:0003924|GO:0005525|GO:0006413
Glsi02g3543 726 Gene3D Translation factors 378 495 - -
Glsi02g3543 726 Pfam Translation-initiation factor 2 504 596 IPR023115 -
Glsi02g3543 726 Gene3D - 503 606 IPR036925 -
Glsi02g3543 726 FunFam Translation initiation factor IF-2 609 713 - -
Glsi02g3543 726 SUPERFAMILY Translation proteins 379 461 IPR009000 -
Glsi02g3543 726 CDD IF2_mtIF2_II 381 476 IPR044145 -
Glsi02g3543 726 SUPERFAMILY Translation proteins 609 711 IPR009000 -
Glsi02g3543 726 SUPERFAMILY Initiation factor IF2/eIF5b, domain 3 505 614 IPR036925 -
Glsi02g3543 726 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 369 IPR027417 -
Glsi02g3543 726 CDD IF2_eIF5B 205 372 - -
Glsi02g3543 726 Pfam Elongation factor Tu GTP binding domain 206 362 IPR000795 GO:0003924|GO:0005525
Glsi02g3543 726 NCBIfam small GTP-binding protein domain 203 356 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3543 Glsi-ChrGlsi02 82414404 82418544 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3543 192 690 Eukaryotic Initiation Factors Gene Family AT1G76810 26.748 8.15e-30 125