Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3538 ATGCAGGAGCAGGACCCGAAATGTGACCCGAGAGAAATATCTGAAGTTATATATATATATAGTCATTATATATCCTTTACCAACAGAGCGAGGTGGAAGTTTGAAAGACCATATGTTCTCAAGAGCTGCGTGGCCTTATCATCTTTCTTCCTTTCCCATCCTATCCCTTGTGGTGCAACCCCGCCCCGCGGTTCTCTCTGCTTCTACTCCCGCTCGTTGCCTTCACCCCCAAATATCCCTCTCCTTGTCATTGTAGAGAAAGTTTCTGTCTTATTTGTCGTTGAGGATTTTGAGCGAACACTTACTGGTTTCAAGGGAACACAAACTAAAGAAGTGAGCTCAGCAGCTGCTGCTGCCAAGAGCAAAATGGCTTCTATCATCGGTGTTTCGTCTATATACCAGACTCCGACTCTGGAACTATATAAAAGGGCAACAACTGCTACAACAACGGGTACTACAACCTCCGCTTCTCTGCAATTGTTTGACAACAAGTCCCGCTTTAACAACGTCTTGAGAACTCACCTTAGTAATAACGGTGGTTGGAACTTCAAGAGCGGGTTTAAGGCCAGAGTTAGGTTTGTTCCTTCGGCTATTGCCACGCCCAATTCTTCTGTTTTGAGTGAAGGGGCTTTCAAGGGTATAGGGCGTGGCTTCTCCGATGACGACCCTTTAGAGGATTCTAGCGAAAACGAGGACTATGACCATGTATCTGAAATTGAGACATCTTCTGCTGCTGCCAACGAGGACGAACTCGACATTTCCAAGCTAGGCTTGCCTCCGCGCCTTGTCAATTCTCTAAAGGGACGTGGGATTTCCAATCTTTTCCCCATTCAGAGAGCTGTGTTATTACCTGCACTACAAGGTCGGGATATCATTGCTCGGGCAAAGACTGGGACTGGGAAGACGCTAGCATTTGGAATTCCAATTATTGAAGGCCTCAGTGAAGATGATCAAAGAAGGGCTCAGAGGCGCCGTCTTCCTAAAGCATTGGTCCTTGCGCCTACCAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCACCCTATCTAGACACGGTTTGTGTTTATGGGGGTGTTTCTTATGTTACACAGCAAAATGCACTATCACGTGGTGTTGATGTAGTGGTTGGAACTCCTGGGAGGATAATTGACCTGATAAACGGGAACAGCCTTAAACTGAATGAAGTGCAGTATTTGGTCCTTGACGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTAGAAAAGCTTCCATCTGAGCGGCAGAGCATGCTTTTTTCTGCAACCATGCCTGGTTGGGTGAAGAAATTGGCAAGAAAATATCTAGACAATCCATTGACGATTGATTTGGTTGGTGAAGAAGAAGAAAAGCTTGCAGAAGGGATTAAACTTTATGCTATATCAGCGACTGCCACATCCAAGCGGACAATTCTTTCTGATCTTGTAACAGTTTATGCAAAGGGTGGGAAGACTATTGTTTTTACTCAGACCAAAAAAGATGCTGATGAAGTATCATTGGCATTAACAAATAGCATAGCTTCTGAGGCACTGCATGGTGATATATCTCAGCATCAGAGGGAGAGAACTTTGAATGGTTTTCGACAAGGAAAATTCACAGTGCTTGTTGCAACTGATGTTGCTGCTCGTGGACTTGATATTCCGAATGTTGATTTGATTATCCACTATGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAGGAGGACAGTTAGATCCCTTGAACGTGATGTAGGATGCAAATTTGAAATTATTAGTCCACCTGCTATAGAAGAAGTTTTGGAGTCATCTGCCCAGCAAATAGTTGCTACACTTAATAGAGTTCATCCAGAGTCTGTTGATTTTTTCACTCCAACTGCACAAAAACTGGTTGAAGAACAAGGACCAAGTGCTCTTGCTGCTGCACTGGCACATCTGAGTGGATTCTCTCGACCTCCCTCATCTCGGTCTCTTATCAACCATGAGCAGGGATGGATTACATTGCAACTGACTCGAGATCCAGCTAATTCTAGAAGATTCCTGTCTGCAAGATCAGTCACTGGATTTCTTTCTGATGTTTGTTCTTCAGCTGCTGATGAAGTTGGAAAAATATATTTAATTGCAGATGAAAGGGTTCAAGGAGCAGTTTTTGATCTTCCAGAGGATATTGCTAGAGAGTTACTGAGTAAGGAATTACCACCTGGAAACACTATTTCCAAGATAACTAAGTTGCCTCCTTTGCAAGATGATAGGCCTCCAAGTGATAACTACGGGAGGTTTTCTGATAGAGACCGGAGCAACCGGAGAGGTTCTGGGGATCGGAGAGGTTTTAAAACCTCACGGGGATGGCAAGGTGGTCTAGACTCTGATGATGACTTTGGTGATGCGTATAGGAGAGGTGGTCGAAGTTATAGAAGTGGCAACAGCAGGTCTCGAACAGCAAAAAGTGGTGGAGATGATTGGCTAATTGGAGGTAGACGATCAAGCAGGTTTTCATCATCGGACAGAAGCTTTGGAGGGTCTTGTTTTAATTGTGGGCAATCTGGGCATAGGGCATCAGAATGTCCCAACAGGCGAACCTTCTAA 2676 0.4462 MQEQDPKCDPREISEVIYIYSHYISFTNRARWKFERPYVLKSCVALSSFFLSHPIPCGATPPRGSLCFYSRSLPSPPNIPLLVIVEKVSVLFVVEDFERTLTGFKGTQTKEVSSAAAAAKSKMASIIGVSSIYQTPTLELYKRATTATTTGTTTSASLQLFDNKSRFNNVLRTHLSNNGGWNFKSGFKARVRFVPSAIATPNSSVLSEGAFKGIGRGFSDDDPLEDSSENEDYDHVSEIETSSAAANEDELDISKLGLPPRLVNSLKGRGISNLFPIQRAVLLPALQGRDIIARAKTGTGKTLAFGIPIIEGLSEDDQRRAQRRRLPKALVLAPTRELAKQVEKEIKESAPYLDTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNSLKLNEVQYLVLDEADQMLAVGFEEDVEVILEKLPSERQSMLFSATMPGWVKKLARKYLDNPLTIDLVGEEEEKLAEGIKLYAISATATSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLALTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQRRTVRSLERDVGCKFEIISPPAIEEVLESSAQQIVATLNRVHPESVDFFTPTAQKLVEEQGPSALAAALAHLSGFSRPPSSRSLINHEQGWITLQLTRDPANSRRFLSARSVTGFLSDVCSSAADEVGKIYLIADERVQGAVFDLPEDIARELLSKELPPGNTISKITKLPPLQDDRPPSDNYGRFSDRDRSNRRGSGDRRGFKTSRGWQGGLDSDDDFGDAYRRGGRSYRSGNSRSRTAKSGGDDWLIGGRRSSRFSSSDRSFGGSCFNCGQSGHRASECPNRRTF 891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3538 891 CDD SF2_C_DEAD 471 600 - -
Glsi02g3538 891 MobiDBLite consensus disorder prediction 785 806 - -
Glsi02g3538 891 MobiDBLite consensus disorder prediction 764 868 - -
Glsi02g3538 891 CDD DEADc 262 458 - -
Glsi02g3538 891 SMART helicmild6 511 591 IPR001650 -
Glsi02g3538 891 FunFam ATP-dependent RNA helicase RhlE 242 460 - -
Glsi02g3538 891 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 486 646 IPR001650 -
Glsi02g3538 891 Gene3D - 223 460 IPR027417 -
Glsi02g3538 891 SUPERFAMILY Retrovirus zinc finger-like domains 860 889 IPR036875 GO:0003676|GO:0008270
Glsi02g3538 891 Pfam GUCT (NUC152) domain 678 778 IPR012562 GO:0003723|GO:0004386|GO:0005524
Glsi02g3538 891 Gene3D - 474 665 IPR027417 -
Glsi02g3538 891 Pfam DEAD/DEAH box helicase 275 446 IPR011545 GO:0003676|GO:0005524
Glsi02g3538 891 Pfam Helicase conserved C-terminal domain 484 591 IPR001650 -
Glsi02g3538 891 CDD GUCT_Hera 685 765 - -
Glsi02g3538 891 Gene3D - 862 890 - -
Glsi02g3538 891 ProSiteProfiles Zinc finger CCHC-type profile. 872 887 IPR001878 GO:0003676|GO:0008270
Glsi02g3538 891 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 328 612 IPR027417 -
Glsi02g3538 891 SMART ultradead3 270 474 IPR014001 -
Glsi02g3538 891 SMART c2hcfinal6 871 887 IPR001878 GO:0003676|GO:0008270
Glsi02g3538 891 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 282 457 IPR014001 -
Glsi02g3538 891 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 231 828 - -
Glsi02g3538 891 Pfam Zinc knuckle 871 887 IPR001878 GO:0003676|GO:0008270
Glsi02g3538 891 FunFam Nucleolar RNA helicase II 479 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3538 Glsi-ChrGlsi02 82376416 82382380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3538 247 613 Eukaryotic Initiation Factors Gene Family AT1G72730 37.566 3.22e-65 223