Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3530 ATGGAAAGCTGCTCAGGAAGTGAAGCTGCAAGAAAACGCATGAAACCAGATGTGGTAGAGAAGGAGGGTGATGAAGCAGAAGCACAGATTGTACAAAAGGAAGAATTTGAGACAAACATTACTGGATCTGAAGAGATGGAGCTCAATATCTCTCATATTTTTGAGAAGATGGAAAATTTCACTGAGAGGGTGTCAGAGCTTCTGGAAGCAGTGAAAACGATGTTCAAGGAACTGAGCAATGAATTCGAAGAGAGACTGATTATGATTCATAAGGAGCAAATTGAGAAATGGCAGGAAGAGATCAAAGAATTGCGTACACTTGATGCCTCAAATGAGGAAGCCACTGCTCTTCTGCATAATGCTCGATATCTACTTCAGAACACTCGTATTGGTCACAATTCCAGATTGCTGTTGCGGAAGTGGAGAACAAATCCCCTTGAATCGCTAACAACCTTGGTTTTGTCTTTACTTGTCGAGGTGGGGATGGAAAAGCTAGTATTCAGTGTTGTAATATTGTTTGTGGGGTTATCCACCACAGGAATTAGAGTAGTATCCGCCGGTTGGCTGCGAGCTCATGCAACTTTCTATGGTGGAAGTGATGCCTCAGGAACAATGGGGGGCGCGTGTGGTTATGGAAATCTCTACACGGACGGTTATGGTATTAAAACAGCAGCCTTGAGTACCGCTCTGTTTAATGAGGGCAAGTCATGCGGAGGGTGCTACCAGATAGTTTGTGACGCAACACAAGTGCCCCAGTGGTGCCTCAGGGGTACTTCCATCACAATTACTGCCACAAACTTCTGTCCCCCAAACTATGCCCTCCCTAACGACAACGGTGGTTGGTGCAATCCTCCAAGGCCTCATTTTGACATGTCTCAGCCTGCGTTTCAGACTATCGCCAAATACAAGGCCGGAATTGTACCAATTCTCTACAAGAAGGTTAGCTGCAAGAGAACTGGAGGCATCAGATTTACCATTAATGGGAGGGACTATTTTGAGCTAGTGCTTATAAGCAACGTAGGTGGAGCTGGAGACATCTCCCGTGTTTGGATCAGAGGGTCCAAAATGAATAACTGGGAGTCCATGTCAAGGAATTGGGGTGTAAACTGGCAGAGCCTAAGCTATCTCAACGGTCAGAGCTTGTCCTTTAGTACCCGTTTGGTACGCTAG 1170 0.4573 MESCSGSEAARKRMKPDVVEKEGDEAEAQIVQKEEFETNITGSEEMELNISHIFEKMENFTERVSELLEAVKTMFKELSNEFEERLIMIHKEQIEKWQEEIKELRTLDASNEEATALLHNARYLLQNTRIGHNSRLLLRKWRTNPLESLTTLVLSLLVEVGMEKLVFSVVILFVGLSTTGIRVVSAGWLRAHATFYGGSDASGTMGGACGYGNLYTDGYGIKTAALSTALFNEGKSCGGCYQIVCDATQVPQWCLRGTSITITATNFCPPNYALPNDNGGWCNPPRPHFDMSQPAFQTIAKYKAGIVPILYKKVSCKRTGGIRFTINGRDYFELVLISNVGGAGDISRVWIRGSKMNNWESMSRNWGVNWQSLSYLNGQSLSFSTRLVR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3530 389 PRINTS Expansin/Lol pI family signature 187 202 IPR007118 GO:0005576
Glsi02g3530 389 PRINTS Expansin/Lol pI family signature 304 320 IPR007118 GO:0005576
Glsi02g3530 389 PRINTS Expansin/Lol pI family signature 227 245 IPR007118 GO:0005576
Glsi02g3530 389 PRINTS Expansin/Lol pI family signature 205 223 IPR007118 GO:0005576
Glsi02g3530 389 PRINTS Expansin/Lol pI family signature 359 373 IPR007118 GO:0005576
Glsi02g3530 389 Coils Coil 80 107 - -
Glsi02g3530 389 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g3530 389 SUPERFAMILY PHL pollen allergen 318 384 IPR036749 -
Glsi02g3530 389 Gene3D - 178 317 IPR036908 -
Glsi02g3530 389 Pfam Lytic transglycolase 223 311 IPR009009 -
Glsi02g3530 389 SMART dpbb_1 223 311 IPR007112 -
Glsi02g3530 389 CDD DPBB_EXPA_N 187 316 - -
Glsi02g3530 389 Gene3D - 321 388 IPR036749 -
Glsi02g3530 389 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 331 389 IPR007117 -
Glsi02g3530 389 Pfam Expansin C-terminal domain 322 384 IPR007117 -
Glsi02g3530 389 FunFam Expansin 178 317 - -
Glsi02g3530 389 PRINTS Expansin signature 296 309 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 218 232 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 320 332 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 247 258 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 260 270 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 368 389 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 332 353 IPR002963 GO:0009664
Glsi02g3530 389 PRINTS Expansin signature 279 296 IPR002963 GO:0009664
Glsi02g3530 389 PANTHER EXPANSIN-A15 169 384 IPR002963 GO:0009664
Glsi02g3530 389 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 206 321 IPR007112 -
Glsi02g3530 389 SUPERFAMILY Barwin-like endoglucanases 181 339 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3530 Glsi-ChrGlsi02 82302396 82310064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3530 151 387 Expansin Gene Family AT4G01630 75.105 1.99e-133 380