Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3523 ATGGCTTCTTCATTCTCAACGCAGTTGGTGCAAAGTCAGAACCTACTTCCACGCTTTTGTCACTTCCAGGGTAATTATAGCCAAGATGTATCGAAGGTTCAAAGGGCTTATACGATCGGTAGCAGTGCCAAATCACAGCTTGGTTACATTAAAGCATTGGCATCAAAATCTCGTTATGCCTCAAGTTTTCCGGTCACAAAACAATCTGGAGTAACATCAAACTCATATAAGAGAATGAGATGTATAAACGCTACTGGAAATGTTCTAGAGCTGCAAGCCAAAGTGACAAGCAAGTGTTTTTTTGATGTAGAAATTGGGGGTGAACCTGTAGGCAGGATTGTATTGGGCCTCTTTGGAGAGGTTGTTCCGAAAACTGTTGAAAATTTCCGTGCTCTGTGCACAGGAGAGAAAGGATATGGTTACAAAGGAAGCTCCTTCCACCGTATAATAAAAGATTTCATGATTCAGGGAGGGGACTTCACCGAAGGAGATGGAACTGGAGGAATCAGTATCTATGGTTCTAGTTTTGCAGATGAGAATTTTGCCTTGACGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCAGGTCCTAATACCAATGGTAGTCAATTTTTCATTTGTACTGTAAAGACTCCATGGCTGGACAATCGCCATGTCGTGTTTGGACACGTCGTTGATGGAATGGATGTTGTGAGGACACTTGAATCCCAGGAGACAAGCAGGTTAGATGGCCCTCGGAAGCCATGCAGAATTGTTAATTGTGGTGAACTGCCTCTAGATGGCTGA 789 0.4347 MASSFSTQLVQSQNLLPRFCHFQGNYSQDVSKVQRAYTIGSSAKSQLGYIKALASKSRYASSFPVTKQSGVTSNSYKRMRCINATGNVLELQAKVTSKCFFDVEIGGEPVGRIVLGLFGEVVPKTVENFRALCTGEKGYGYKGSSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFADENFALTHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVVDGMDVVRTLESQETSRLDGPRKPCRIVNCGELPLDG 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3523 262 Gene3D - 87 261 IPR029000 -
Glsi02g3523 262 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 100 257 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 SUPERFAMILY Cyclophilin-like 90 258 IPR029000 -
Glsi02g3523 262 CDD cyclophilin_ABH_like 97 256 - -
Glsi02g3523 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 101 256 IPR002130 GO:0000413|GO:0003755
Glsi02g3523 262 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 98 258 - -
Glsi02g3523 262 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Glsi02g3523 262 FunFam Peptidyl-prolyl cis-trans isomerase 86 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3523 Glsi-ChrGlsi02 82245238 82247957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3523 111 255 U-box Gene Family AT5G67530 45.205 3.59e-31 119