Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3515 ATGGGGAGGCACTCTTGTTGTTACAAGCAGAAACTTCGGAAGGGTCTCTGGTCGCCTGAAGAGGATGAAAAACTTTTGAGGCATATTACTAAGTATGGCCATGGGTGTTGGAGCTCTGTTCCTAAGCAAGCAGGTTTGCAGAGATGCGGAAAAAGCTGCAGGCTTAGGTGGATCAACTATTTAAGGCCTGATTTGAAGAGAGGTACATTCTCCCAAGAAGAGGAAACTCTCATAATCGAGCTTCATGCAGTGTTAGGGAATAGATGGTCTCAAATTGCAGCACAGTTGCCAGGGAGAACGGACAATGAAATAAAGAACCTGTGGAATTCTTGCTTAAAGAAGAAGCTCAGGCAAAGAGGTATAGACCCTGTTACCCATAAACCACTATCTGAGGTCGAAAATGGAGAGGACAAAGATGCATCAGCCAGGAGTCGAGAGAAAATGACTGCTGTATCCAATGAATTGAACCTCCTGAAATCAGAAAGCTCCAGGTCTGATGCAGCTTCCTATGAGCAGAAACCATGTTCAATTGCCTCAAAAGCCTATGCATCCGAGATGGAAGGTTCTTTCAGCTCCAAGATTAACAACAGAAGCAACAGTAATTTGATGACCGATTGTTCAAGCAAAGACTTCTTCCTAGACAGGTTTATGGCGAGCCACCAGGAAAGCTACACTACCAGTTGCCAACCCTCAGATTTGATGGGGAATTTTCCCCTTCACATGAGCTATGCATCAACTGACAGTCTCTCAAATAACTCGAACTCTTCTCGTTGGTTCAGCCAAGCTGGAAGACCATTTGACATGAACTCTGACTTTGCTTCCAATGCCATGTCCACTATCCTTCCCATTTCAACCAGCTCATTTCTCCCCACTTCTATTTGCTACAAACCTTCGCACACTGTTCCCTCTGATGACATTTGTACGGCCTCTTTCACTGTGAATGGATCTCATTACTGGGAAGCCAGTGCCTACAACCACAGCAATAGCAGCAATAGAAGCAATTGCAGCACAGAGTTGAGGAGTAACAGCCCCTTCAACGGGCTGCAGAACAGTATCCCCTCTTGGGGATCGACAGATTATAGCGGCGCTGCTAAAGAGGCTCCAATTCACGTGATGGAAAGCCAGACCGAAGAAGCCAAGTGGGCTGAGTACCTTCATAACCCAATCTTAATGCTGGCTGCTGTACAAAATCAGACTCCAGAACCCTTATGCAACGAAATGAAGCCAGCCATCCATTTGGTGCCTGATGCTTTAGGGCCTATTTTACCCCATAACAAGCAGCAAGAACCCTCACAAAATTCTAATATATTTTCCAGGGATATTCAGAAGCTCACAGCAGCCTTTGGACATATATAG 1356 0.455 MGRHSCCYKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEETLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPVTHKPLSEVENGEDKDASARSREKMTAVSNELNLLKSESSRSDAASYEQKPCSIASKAYASEMEGSFSSKINNRSNSNLMTDCSSKDFFLDRFMASHQESYTTSCQPSDLMGNFPLHMSYASTDSLSNNSNSSRWFSQAGRPFDMNSDFASNAMSTILPISTSSFLPTSICYKPSHTVPSDDICTASFTVNGSHYWEASAYNHSNSSNRSNCSTELRSNSPFNGLQNSIPSWGSTDYSGAAKEAPIHVMESQTEEAKWAEYLHNPILMLAAVQNQTPEPLCNEMKPAIHLVPDALGPILPHNKQQEPSQNSNIFSRDIQKLTAAFGHI 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3515 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi02g3515 451 Gene3D - 69 147 - -
Glsi02g3515 451 SMART sant 13 63 IPR001005 -
Glsi02g3515 451 SMART sant 66 114 IPR001005 -
Glsi02g3515 451 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g3515 451 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g3515 451 FunFam MYB transcription factor 68 140 - -
Glsi02g3515 451 Gene3D - 11 67 - -
Glsi02g3515 451 CDD SANT 17 61 IPR001005 -
Glsi02g3515 451 MobiDBLite consensus disorder prediction 122 156 - -
Glsi02g3515 451 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g3515 451 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Glsi02g3515 451 PANTHER MYB DOMAIN PROTEIN 55 1 350 - -
Glsi02g3515 451 CDD SANT 69 109 IPR001005 -
Glsi02g3515 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi02g3515 451 MobiDBLite consensus disorder prediction 122 145 - -
Glsi02g3515 451 FunFam Myb transcription factor 11 67 - -
Glsi02g3515 451 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3515 Glsi-ChrGlsi02 82208363 82209915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3515 1 450 MYB Transcription Factor Family AT1G09540 41.612 2.09e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3515 Myb_DNA-binding 2.2e-14 CL0123