Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3509 ATGGACAACCAACTACACCGCCATGACTTGACCTTCCCGAGCTCCGGCGACTTTCTCCGTCGGAATTTAAATCAAATAAACAACAACTCCAGTGATCGTCCAATCAAAGAAATGGATTTCTTCTCCGGTTCAGCCAATAAATCTGATGAAAATAGAAATCACCAGCCTCAAGATCCTCATGACAGGATCATTATTAATGGGGGATCATCAACTTCTCTATCTGATCGCCCACTCAACACCGGACTGAATTTAACGTGTGCAAGTTCTGGAATGCCAAGATCGGCAAGTGATGATGAAAAGCTCAATGCTGAACTGATTTCGCTTCAAAATGAATTGCGGAGACAGCATGAAGAGAATCGGAAGTTGAAAAACGGAAATGATGCGTCGGTTTCAGACGATAAGACTCGAGAGCTATCAGTTTCTCCTTCAAACAATGCGGAGGTAATGTCAAAGCAACGTGACCATCATTTGGCTAAACTTCTTGGAAAGCAAGCTTGTACTGAAGATGGTCTTGACCGTTCCTCTCAGAGTTGGGGATCATCCAAGAGTCCCAAGTTAGAAGAATCCAAAAGTGAAGAACAAAAGGCGGATATCCCTTTCAGAAAAGCCAGGGTTTCCGTGCGTGCAAGATCAGAAGCTCCTCTGATTAGTGATGGATGTCAATGGAGGAAATATGGACAAAAAATGGCCAAGGGTAATCCTTGTCCTCGTGCCTACTATCGTTGCACTATGGCTGTAGGATGCCCCGTTCGTAAGCAGGTGCAAAGATGCGCTGAGGACAAGACAGTGCTCATAACAACTTACGAAGGCAATCACAACCACCCTCTCCCACCAGCAGCCACTGCCATGGCCAATACCACATCGGCAGCAGCGGCGATGCTCCTATCAGGTTCTACTACGAGCAAGGAAGGGTTAACAAACTCTGCAGGCTACATCTCTTCTGTACCCTACGCATCGATGGCAACCCTATCAGCGTCTGCACCATTCCCCACCATCACCCTTGACTTGACTCAGAGCCCCAACGGCATGCAGCTGCACCGAGTATCGCCCTCTGGGGTCACGTTTCCTCTGCCATTACAAGGTTGTCCGCAGCTAATAGGGCACCCCATGCTGTTCCCTCAGAAGCTACCAGCTATGCCCCTAGCTCAGCTAGGGCAACGACAGCCTTCGGCTATGATGGAGACGGTGACAGCAGCCATTGCTTCTGATCCAAACTTCACTGCAGCCCTGGCAGCAGCAATCTCCTCAATTATAAATGGGGCACCCAGAACCAATGATGGGAGTAATATCAATAACAATGGTGGAACTGGAAATAATACTATTCCCCTTAATGGATTATCTGTATCACCCGGGTCGCCACAGCTTCCTCAGTCCTGCACTACATTCTCCACCAACTAG 1398 0.4814 MDNQLHRHDLTFPSSGDFLRRNLNQINNNSSDRPIKEMDFFSGSANKSDENRNHQPQDPHDRIIINGGSSTSLSDRPLNTGLNLTCASSGMPRSASDDEKLNAELISLQNELRRQHEENRKLKNGNDASVSDDKTRELSVSPSNNAEVMSKQRDHHLAKLLGKQACTEDGLDRSSQSWGSSKSPKLEESKSEEQKADIPFRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTVLITTYEGNHNHPLPPAATAMANTTSAAAAMLLSGSTTSKEGLTNSAGYISSVPYASMATLSASAPFPTITLDLTQSPNGMQLHRVSPSGVTFPLPLQGCPQLIGHPMLFPQKLPAMPLAQLGQRQPSAMMETVTAAIASDPNFTAALAAAISSIINGAPRTNDGSNINNNGGTGNNTIPLNGLSVSPGSPQLPQSCTTFSTN 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3509 465 Gene3D WRKY domain 201 278 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g3509 465 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 91 428 IPR044810 GO:0003700
Glsi02g3509 465 MobiDBLite consensus disorder prediction 114 153 - -
Glsi02g3509 465 SMART WRKY_cls 216 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g3509 465 ProSiteProfiles WRKY domain profile. 211 277 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g3509 465 MobiDBLite consensus disorder prediction 114 134 - -
Glsi02g3509 465 FunFam probable WRKY transcription factor 31 201 278 - -
Glsi02g3509 465 Coils Coil 98 125 - -
Glsi02g3509 465 MobiDBLite consensus disorder prediction 428 465 - -
Glsi02g3509 465 MobiDBLite consensus disorder prediction 64 78 - -
Glsi02g3509 465 SUPERFAMILY WRKY DNA-binding domain 209 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g3509 465 MobiDBLite consensus disorder prediction 165 197 - -
Glsi02g3509 465 Pfam WRKY DNA -binding domain 218 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g3509 465 MobiDBLite consensus disorder prediction 169 184 - -
Glsi02g3509 465 MobiDBLite consensus disorder prediction 26 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3509 Glsi-ChrGlsi02 82141330 82143952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3509 7 465 WRKY Transcription Factor Family AT4G01720 43.275 4.21e-84 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi02g3509 WRKY 4.6e-24 CL0274