Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi02g3502 | ATGACTGTTGTTGGCACCGATACCACAATTGCCATCACATACGCTCGTTTCGTTGACCGCCATCTGCTCCCCCTCCAGCATATTTGTAATAGGTGGAGATTCAGGATGGCTGGGGGTGAAGCAAAGAACCCCGCTGCCAAAAAATCTGGTGGTGGGAAGAAGAAGGAGGTGAAGAAAGAGACAGGTTTAGGGCTTTCAAATCGAAAGGCAGAGAACTTTGGGGAGTGGTACTCTGAGGTAGTGGTGAATGGGGAAATGATTGAGTACTATGATATTTCTGGATGCTATATTCTTAGGCCATGGACAATTTCAATATGGGAGATCATGCAAGCCTTCTTTGATGCTGAGATCAAGAAAATGAAAGTTAAGAACTGCTACTTTCCTTTATTTGTGTCTCCTGGTGTTTTGCAAAAGGAGAAGGATCACGTTGAAGGCTTTGCTCCAGAGGTTGCTTGGGTGACAAAGTCCGGGGAAACCAATTTAGAAATTCCAATTGCTATTCGCCCAACTAGTGAGACTGTCATGTATCCCTACTACTCTAAGTGGATAAGGGGACATCGTGATTTGCCTTTGAAACTTAATCAGTGGTGCAATGTTGTTAGATGGGAGTTCAGTAATCCCACACCATTCATCAGGAGTCGTGAGTTTCTTTGGCAGGAAGGGCATACTGCTTTTGCAACAAAGGAGGAGGCGGATGCAGAGGTACTTGATATATTGGAATTGTATAGGCGTATATACGAAGAATATATGGCAATTCCTGTGATAAAGGGTAAGAAAAGTGAGCTGGAGAAGTTTGCTGGTGGGCTTTACACCACCAGTGTTGAGGCATTTATTCCAAACACTGGTCGTGGTATACAAGGTGCTACTTCTCATTGTCTGGGCCAAAACTTTGCTAAAATGTTTGAGATAAACTTTGAAAATGAGAAAGGAGAGAAAGCAATGGTCTGGCAGAACTCGTGGGCATATAGTACTCGAACTATTGGGGCGATGGTGATGGTCCACGGGGATGACAAAGGGCTGGTGCTGCCTCCTAAAGTAGCATCAGTCCAAGTCATTGTGATTCCTGTGCCTTATAAAGATGCTGATACTCAAGGTATTATTGATGCCTGTTCTGCAACTGTAAATACTTTGTATGAAGCAGGCATTCGTGCTGAGTCTGACTTTAGAGATAACTATTCTCCTGGTTGGAAGTATTCACACTGGGAAATGAAAGGTGTTCCTTTAAGGATTGAAATTGGGCCCAAGGACTTGGCAAATAAGCAGGTTCGTGCTGTTCGACGTGATAATTTGGCAAAAGTAGACATACCTAGGGATGATTTGGTTGAGCAAGTCAAAGACTTGCTGCATAATATTCAACAAAACCTTTTTGATGTTGCCAAACAAAAACGAGATGCTTGCATTCAGGTTGTACATACTTGGGATGAATTTGTTGGAGCATTGAACCAACGAAAATTGATCTTAGCTCCTTGGTGTGATGAGGAGGCGGTGGAAGTAGATGTGAAAGCAAGGACAAAGGGTGAGATGGGAGCAGCTAAGACCCTTTGTAGTCCCTTTGATCAGCCAGAACTCCCAGAAGGTACGAAGTGCTTTGCATCAGGAAAGCGTGCTACGAGGTGGACATACTGGGGCAGAAGTTACTAG | 1641 | 0.44 | MTVVGTDTTIAITYARFVDRHLLPLQHICNRWRFRMAGGEAKNPAAKKSGGGKKKEVKKETGLGLSNRKAENFGEWYSEVVVNGEMIEYYDISGCYILRPWTISIWEIMQAFFDAEIKKMKVKNCYFPLFVSPGVLQKEKDHVEGFAPEVAWVTKSGETNLEIPIAIRPTSETVMYPYYSKWIRGHRDLPLKLNQWCNVVRWEFSNPTPFIRSREFLWQEGHTAFATKEEADAEVLDILELYRRIYEEYMAIPVIKGKKSELEKFAGGLYTTSVEAFIPNTGRGIQGATSHCLGQNFAKMFEINFENEKGEKAMVWQNSWAYSTRTIGAMVMVHGDDKGLVLPPKVASVQVIVIPVPYKDADTQGIIDACSATVNTLYEAGIRAESDFRDNYSPGWKYSHWEMKGVPLRIEIGPKDLANKQVRAVRRDNLAKVDIPRDDLVEQVKDLLHNIQQNLFDVAKQKRDACIQVVHTWDEFVGALNQRKLILAPWCDEEAVEVDVKARTKGEMGAAKTLCSPFDQPELPEGTKCFASGKRATRWTYWGRSY | 546 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi02g3502 | 546 | FunFam | Bifunctional glutamate/proline--tRNA ligase | 65 | 343 | - | - | |
| Glsi02g3502 | 546 | ProSiteProfiles | Aminoacyl-transfer RNA synthetases class-II family profile. | 128 | 343 | IPR006195 | - | |
| Glsi02g3502 | 546 | FunFam | Proline--tRNA ligase, cytoplasmic | 467 | 546 | - | - | |
| Glsi02g3502 | 546 | Pfam | Anticodon binding domain | 350 | 446 | IPR004154 | - | |
| Glsi02g3502 | 546 | MobiDBLite | consensus disorder prediction | 41 | 60 | - | - | |
| Glsi02g3502 | 546 | Gene3D | - | 344 | 464 | IPR036621 | - | |
| Glsi02g3502 | 546 | Gene3D | - | 467 | 546 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | Pfam | Prolyl-tRNA synthetase, C-terminal | 473 | 546 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | Pfam | tRNA synthetase class II core domain (G, H, P, S and T) | 166 | 331 | IPR002314 | GO:0000166|GO:0004812|GO:0005524|GO:0006418 | |
| Glsi02g3502 | 546 | SUPERFAMILY | Class II aaRS and biotin synthetases | 71 | 337 | IPR045864 | - | |
| Glsi02g3502 | 546 | Gene3D | Bira Bifunctional Protein; Domain 2 | 66 | 343 | IPR045864 | - | |
| Glsi02g3502 | 546 | NCBIfam | proline--tRNA ligase | 68 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | SUPERFAMILY | Class II aaRS ABD-related | 338 | 464 | - | - | |
| Glsi02g3502 | 546 | CDD | ProRS_anticodon_zinc | 339 | 546 | - | - | |
| Glsi02g3502 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 195 | 203 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 124 | 142 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 165 | 176 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | PRINTS | Prolyl-tRNA synthetase signature | 205 | 216 | IPR002316 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | CDD | ProRS_core_arch_euk | 72 | 333 | IPR033721 | - | |
| Glsi02g3502 | 546 | SMART | ProRS_C_1_2 | 473 | 546 | IPR016061 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | PANTHER | PROLYL-TRNA SYNTHETASE | 40 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | FunFam | bifunctional glutamate/proline--tRNA ligase | 344 | 464 | - | - | |
| Glsi02g3502 | 546 | Hamap | Proline--tRNA ligase [proS]. | 66 | 546 | IPR004499 | GO:0004827|GO:0005524|GO:0005737|GO:0006433 | |
| Glsi02g3502 | 546 | SUPERFAMILY | C-terminal domain of ProRS | 468 | 546 | IPR017449 | GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi02g3502 | Glsi-ChrGlsi02 | 82102686 | 82111795 | Dispersed/Wgd |