Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3499 ATGGAGACCGAGACTAGCCAGGACGGGGATCGAAACAAACACGAAGAGGCAACCACATCAAAGAATTATGCAGAAACCAGCACAAACGAGGAAAAGGGAGAAAAGAGCAAACAAAAAGAAAAAGCTGAGACAGTTCCTTTTCACAAGTTGTTCACGTTTGCAGACTCAACTGATATATTGTTGATGATGGTGGGCACCCTTGGGGCCGTTGGAAATGGTTTGAGTTTGCCTATCATGACGTTACTGTTCGGGCAAATGATCAACACCTTCGGAAATAACCAGAAAGACGCCGACGTCGTTGATCAAGTTTCCAAGGTGTCTCTGAAATTTGTATACTTGGCGGTAGGATCTGGGGTGGCAGCTTTCCTCCAGGTGACTTGCTGGATGGTCACGGGGGAGAGACAGGCAGCGCGAATAAGGGGTTTGTATTTGAAAACAATACTGAGACAAGATGTTGCTTTCTTTGATAAGGAAACAAACACTGGAGAGGTGGTAGGGAGAATGTCAGGTGACACTGTTCTCATACAAGACGCCATGGGTGAGAAGGTTGGGAAATTCCTGCAGCTCATATCAACATTCATTGGCGGTTTTGTGGTATCATTTATCAAAGGATGGCTTCTGACACTAGTCATGTTGTCTACTCTTCCACTTCTTGTGGTGTCTGGCGCAGCTATGGCCTTGATTATTGGCAGGATGGCATCACAGGGTCAAAGCGCTTATGCAAAAGCTGCAAATGTAGTTGAACAGACGATTGGCTCAATCAGAACAGTTGCATCCTTCACTGGGGAAAAACAGGCAGTATCTAGTTACAGCAAATTTCTTGTAGATGCATACAAATCAGGAGTTCATGAAGGTTTCGTAGCTGGAATGGGTCTTGGAACGGTTATGTTTGTTATTTTCTGCGGCTATGCTTTGGCTATATGGTATGGTGCAAAGTTGATACTGGATAAAGGATATAATGGGGGTACAGTGATTAATGTGATTTTTGCCGTCTTAACTGCTTCCATGTCTCTTGGCCAGGCATCCCCTTGCATGAGTGCTTTTGCTGCAGGTCAAGCTGCAGCTTATAAAATGTTCGAGACTATTGAGAGGAAACCGGAGATAGATTCTAATGATCCAAAAGGAAAAACATTAGAGGATATTCATGGTGATATAGAGTTAAGAGATGTTTATTTCAGTTATCCAGCCAGACCCGATGAGCTTATTTTCAATGGGTTCTCTCTAAGAATACCTAGTGGCACAACTGCAGCTTTGGTTGGACAAAGTGGAAGTGGAAAGTCTACAGTCATCAGTTTAATAGAAAGATTCTATGATCCACAGGCAGGTGAAGTTCTCATAGATGGCATTAACATAAAAGAATTTCAGCTTAGATGGATCAGAGGAAAAATTGGCCTTGTCAGCCAGGAGCCTGTGCTATTTGCATCTAGCATTAAGGATAACATTGCTTATGGCAAGGAGGGATCAACAATTGAAGAGATAAGAGCTGCTTCTGAACTTGCAAATGCTGCTAAATTCATCGATAAACTGCCTCAGGGATTGGACACAATGGTTGGCGAGCATGGAACTCAGTTGTCTGGTGGACAGAAGCAGCGCATTGCCATTGCAAGAGCAATTCTGAAAAATCCTAGAATTCTACTTCTGGATGAAGCCACAAGTGCACTTGATGCAGAGTCTGAAAGGATAGTGCAAGAGGCTCTAGACAGAATCATGGTCAACCGAACTACAGTTGTTGTAGCGCATCGCTTGAGCACAGTGAGGAATGCTGACATGATTGCTGTGATCCATAGAGGAAAAATGGTTGAGAAAGGAACACACTCTGAACTACTCAAGGATCCTGAGGGAGCATACTCTCAACTTATACGCTTACAAGAAGTAAACAAGGAGTCAGAAGACACTGCAGATCATCCAAATAAATCTGAACTTTCCATAGAATCTTCTAAGCAGTCAAGTCTTAAGAGGTCACTGGGAAGATCCATAAGCCGGGGATCATCAGCAGGAAATAGTAGCCGCCACTCATTTTCAGTTCAATTTGGTTTGCCCACTGGAGTGAACATCCCTGATCCAGAACTTGGAAAATCGGAATCAAAAGAAGAAGCACCAAAGGTTCCACTCCGCCGCCTTGCTTACCTTAACAAGCCAGAGATTCCAGTGCTTTTGATTGGCTCTATAGCTGCCGTTGCAAATGGTGTTATACTTCCAGTATTTGGTTTGTTGTTTTCTAGTGTGATCAAAACATTCTATGAACCACATGAAGAGATGAAAAAGGATTCCAAGTTCTGGGCACTAATGTTTATGACACTGGGTCTTGCATCTTTGCTGGCAATTCCGGCGCGAGGATACTTTTTTGCTGTGGCTGGTTGCAAGTTAATTCAACGTATCAGGCTAATATGTTTTGAGAAGGTAGTGAACATGGAGGTGAGTTGGTTTGATGAGCCTGAGCATTCCAGTGGTGCAATTGGAGCAAGGCTCTCAGCAGATGCTGCAAGTGTGCGTGCCCTTGTTGGGGATGCTTTAGGACAAATGGTTGAAAACATAGCATCAGCGTTGGCGGGTTTGATCATTGCTTTTATCGCAAGCTGGCAATTGGCATTTATTGTTCTTGTTTTGCTTCCTTTGATTGGACTAAATGGATATATTCAAGTAAAATTCATGAAAGGGTTCAGTGCAGATGCAAAGATGATGTACGAGGAAGCAAGTCAAGTCGCTAATGATGCAGTAGGAAGTATAAGAACAGTGGCTTCATTCTGTGCTGAAGAGAAGGTAATGGAACTATACAGGAAGAAATGTGAAGGCCCTATGAAATCAGGTATACGGCAAGGCTTGATCAGTGGAACGGGATTCGGGTTGTCATTTTTCCTACTCTTTTGCGTCTACGCAACAAGTTTCTACGCAGGATCTAGACTTGTGGAAGCTGGAAAAGCAACATTCTCAGATGTTTTTCGGGTTTTCTTTGCTTTAACTATGGCAGCTCTTGCAATTTCGCAATCAAGCTCCTTTGCTCCTGATTCTGGCAAAGCCAAGTCAGCTGCTGCTTCCATATTTGGAATAATTGACAGGAAATCGTTGATAGATCCAAGTGGTGAGTCTGGTACCACACTGGACAGTGTGAAGGGAGAAATTGAGCTTCGTCATGTGAGCTTTAAGTATCCATCAAGACCAGATATACAGATTTTCCGAGACCTTAGCTTGGCTATTCATTCTGGCAAGACGGTGGCCCTAGTTGGTGAAAGTGGAAGTGGGAAATCCACAGTGATTGCATTATTACAGAGATTTTATGATCCTGATTCAGGTCATATTACACTTGATGGAATAGAAATTCAGAAGTTACAGCTAAAATGGTTAAGGCAGCAGATGGGACTTGTAAGCCAAGAGCCAGTACTGTTCAACGACACTATTCGTGCCAATATTGCGTATGGAAAGGATGGCAATGCAACCGAAGCAGAAATCATAGCTGCAGCCGAACTTGCCAATGCCCATAGGTTCATTAGTGGCTTACAACAGGGTTATGATACAATAGTGGGAGAGAGAGGAATCCAATTATCTGGTGGGCAGAAGCAAAGGGTAGCGATTGCACGTGCTATAATTAAAAGTCCAAAGATTTTGCTACTAGATGAGGCCACAAGTGCATTAGACGCTGAGTCTGAGAGAGTAGTTCAAGATGCATTGGACAAAGTGATGGTGAGCAGAACTACTGTGGTCGTAGCACATCGTCTATCTACAATAAAAAATGCAGACGTTATTGCAGTGGTTAAAAATGGAGTTATCGTAGAGAAAGGAAGGCATGAAACCCTGATTAAGATTAAGGATGGATTTTATGCTTCTTTAGTCCAACTTCATACAAGTGCTTCCACAGCATGA 3858 0.4318 METETSQDGDRNKHEEATTSKNYAETSTNEEKGEKSKQKEKAETVPFHKLFTFADSTDILLMMVGTLGAVGNGLSLPIMTLLFGQMINTFGNNQKDADVVDQVSKVSLKFVYLAVGSGVAAFLQVTCWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVVGRMSGDTVLIQDAMGEKVGKFLQLISTFIGGFVVSFIKGWLLTLVMLSTLPLLVVSGAAMALIIGRMASQGQSAYAKAANVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFVAGMGLGTVMFVIFCGYALAIWYGAKLILDKGYNGGTVINVIFAVLTASMSLGQASPCMSAFAAGQAAAYKMFETIERKPEIDSNDPKGKTLEDIHGDIELRDVYFSYPARPDELIFNGFSLRIPSGTTAALVGQSGSGKSTVISLIERFYDPQAGEVLIDGINIKEFQLRWIRGKIGLVSQEPVLFASSIKDNIAYGKEGSTIEEIRAASELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLSTVRNADMIAVIHRGKMVEKGTHSELLKDPEGAYSQLIRLQEVNKESEDTADHPNKSELSIESSKQSSLKRSLGRSISRGSSAGNSSRHSFSVQFGLPTGVNIPDPELGKSESKEEAPKVPLRRLAYLNKPEIPVLLIGSIAAVANGVILPVFGLLFSSVIKTFYEPHEEMKKDSKFWALMFMTLGLASLLAIPARGYFFAVAGCKLIQRIRLICFEKVVNMEVSWFDEPEHSSGAIGARLSADAASVRALVGDALGQMVENIASALAGLIIAFIASWQLAFIVLVLLPLIGLNGYIQVKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMELYRKKCEGPMKSGIRQGLISGTGFGLSFFLLFCVYATSFYAGSRLVEAGKATFSDVFRVFFALTMAALAISQSSSFAPDSGKAKSAAASIFGIIDRKSLIDPSGESGTTLDSVKGEIELRHVSFKYPSRPDIQIFRDLSLAIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGIEIQKLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKDGNATEAEIIAAAELANAHRFISGLQQGYDTIVGERGIQLSGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVSRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGRHETLIKIKDGFYASLVQLHTSASTA 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3499 1285 SUPERFAMILY ABC transporter transmembrane region 700 1020 IPR036640 GO:0005524|GO:0016020
Glsi02g3499 1285 Gene3D - 1030 1284 IPR027417 -
Glsi02g3499 1285 SMART AAA_5 412 598 IPR003593 GO:0016887
Glsi02g3499 1285 SMART AAA_5 1067 1260 IPR003593 GO:0016887
Glsi02g3499 1285 MobiDBLite consensus disorder prediction 626 641 - -
Glsi02g3499 1285 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g3499 1285 Pfam ABC transporter 1059 1208 IPR003439 GO:0005524
Glsi02g3499 1285 CDD ABC_MTABC3_MDL1_MDL2 385 623 - -
Glsi02g3499 1285 PANTHER ABC TRANSPORTER B FAMILY 24 625 IPR039421 -
Glsi02g3499 1285 ProSitePatterns ABC transporters family signature. 524 538 IPR017871 GO:0005524|GO:0016887
Glsi02g3499 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1040 1277 IPR003439 GO:0005524
Glsi02g3499 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 719 1005 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g3499 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 385 621 IPR003439 GO:0005524
Glsi02g3499 1285 Gene3D ABC transporter type 1, transmembrane domain 108 1014 IPR036640 GO:0005524|GO:0016020
Glsi02g3499 1285 FunFam ABC transporter B family member 1 375 624 - -
Glsi02g3499 1285 CDD ABC_MTABC3_MDL1_MDL2 1040 1278 - -
Glsi02g3499 1285 Pfam ABC transporter 404 552 IPR003439 GO:0005524
Glsi02g3499 1285 ProSitePatterns ABC transporters family signature. 1180 1194 IPR017871 GO:0005524|GO:0016887
Glsi02g3499 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 375 623 IPR027417 -
Glsi02g3499 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1031 1278 IPR027417 -
Glsi02g3499 1285 MobiDBLite consensus disorder prediction 642 679 - -
Glsi02g3499 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 64 350 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g3499 1285 Gene3D - 383 640 IPR027417 -
Glsi02g3499 1285 MobiDBLite consensus disorder prediction 626 698 - -
Glsi02g3499 1285 FunFam ABC transporter B family member 9 1007 1029 - -
Glsi02g3499 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 62 346 - -
Glsi02g3499 1285 SUPERFAMILY ABC transporter transmembrane region 48 369 IPR036640 GO:0005524|GO:0016020
Glsi02g3499 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 708 1023 - -
Glsi02g3499 1285 Pfam ABC transporter transmembrane region 63 336 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g3499 1285 Pfam ABC transporter transmembrane region 718 990 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Glsi02g3499 1285 FunFam ABC transporter B family member 1 698 1006 - -
Glsi02g3499 1285 FunFam ABC transporter B family member 1 1030 1280 - -
Glsi02g3499 1285 FunFam ABC transporter B family member 9 49 381 - -
Glsi02g3499 1285 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3499 Glsi-ChrGlsi02 82081118 82086122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3499 37 1279 Calmodulin-binding Proteins AT2G36910 45.462 0.0 1082