Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3493 ATGTCAGGCAAAATAGTCGTGTCCGTGATTTCTGTGATTCTGGTGGTGGGTTGTGCCATCGGTGTATTTGCTATTGTGAAACACAGCAGAGATAATGGCGGTGTGGTGACCTCCCACTCGAAGGCTGTGGCAGCGCTATGCCAAAAGTCAAACAAGCAACAGCTATGCGAAGACACGCTGGGCCCTGTCAACACAAATGACCCAAAGGATTACATCAAGACAGTATTGCAAAGCGCGATGGACAGTGTGATCAAGGCCTTCAACATGTCCGATAAGCTCACAGTGGAGAATAGCAAGAGTGAGGAAGGCATGAAAATGGCCCTAGAGGATTGCAGGGACTTGATGCAGGCTGGCGTTTATGACGAGTACATTCTTATTGATAAGAAGATGCCCAACATTTTTATGTACGGCGACGGCCCTACTAAGACCATTATCACCGGAAAGAAGAGCAGAACGGCAGGTTACAAGACAATGAGAAGTGCCACCTTCGCCACCCAAGCCGATAATTTCATAGGCAAGGATATGACATTTGAGAACACCGCCGGTCCTGAAGGAGAACAAGCAGTGGCACTTCGTGTGCAAGGAGAAAATTCGGCTTTTTACAACTGCCATATCGTTGGTTACCAAGACAGCTTGTATGCCCAATCCAAGCGTCAGTTCTACCGTGACTGTGAAATCTCTGGCACAGTGGACTTCATCTTTGGCGTCTCGTCCACCGTAGTCCAAAACTCCAAGATCATTGTGAGGAAGCCCGGTCCAAATCAGAAGAACATACTTGTGGCAGATGGGTCGCCAGAACCTAATATGCCCACGGGAATTGTCCTTCATAAATGTGAGATCGTTCCAGAGCCTGCCCTTGTCCCGGAGAGGCTCCAAGTGCCGACTTACTTGGCCAGGCCATGGAAGGCTTACTCAAAAGCCGTCTTCATGGAAAACATTCTTGGCGACTTAATTCAACCAGAAGGGTACCTTCCTTGGCTTGGAGATTTATACCTTAATACCTGTTTCTTCGCCGAGTATGCTAACACTGGACCTGGTGCTAAAGCTGATAGGAGGGTCAACTGGGGTCGTGGCCAACTTAGCAAGGCCGCCGCTGCTAGATACACTGCTAACCAATTTATTTATGGTAACACATGGCTGCCCACCACCGGTGTTCCTTTCGACCTTGGCTTTTGA 1176 0.4881 MSGKIVVSVISVILVVGCAIGVFAIVKHSRDNGGVVTSHSKAVAALCQKSNKQQLCEDTLGPVNTNDPKDYIKTVLQSAMDSVIKAFNMSDKLTVENSKSEEGMKMALEDCRDLMQAGVYDEYILIDKKMPNIFMYGDGPTKTIITGKKSRTAGYKTMRSATFATQADNFIGKDMTFENTAGPEGEQAVALRVQGENSAFYNCHIVGYQDSLYAQSKRQFYRDCEISGTVDFIFGVSSTVVQNSKIIVRKPGPNQKNILVADGSPEPNMPTGIVLHKCEIVPEPALVPERLQVPTYLARPWKAYSKAVFMENILGDLIQPEGYLPWLGDLYLNTCFFAEYANTGPGAKADRRVNWGRGQLSKAAAARYTANQFIYGNTWLPTTGVPFDLGF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3493 391 ProSitePatterns Pectinesterase signature 2. 226 235 IPR033131 -
Glsi02g3493 391 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 118 IPR035513 -
Glsi02g3493 391 Pfam Pectinesterase 115 377 IPR000070 GO:0030599|GO:0042545
Glsi02g3493 391 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 18 - -
Glsi02g3493 391 CDD PMEI-like_3 45 121 - -
Glsi02g3493 391 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 118 IPR035513 -
Glsi02g3493 391 SUPERFAMILY Pectin lyase-like 116 389 IPR011050 -
Glsi02g3493 391 PANTHER PECTINESTERASE 116 382 - -
Glsi02g3493 391 Gene3D - 119 391 IPR012334 -
Glsi02g3493 391 FunFam Pectinesterase 4 94 391 - -
Glsi02g3493 391 Pfam Plant invertase/pectin methylesterase inhibitor 42 120 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3493 Glsi-ChrGlsi02 82047521 82049300 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3493 115 387 Carbohydrate Esterase AT5G49180 48.727 1.54e-89 279