Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3487 ATGGAAGCTAGATTTGGTACGGAAGCTTTTCACTTGTACGGTGTGAGTTCCTCGGATTTACGGGCCGTGGGGAAGAGGTCCATGGAATGGGATTTGAATGATTGGAAATGGGACGGTGATCTTTTTATAGCTAGCCGGCTGACTTCAGTGCCAGCCGATAATGTAGGCCGACAATTTTTACCTCTTGGCTCTGGGATCCCCACTGCTGGAGGGTCCTCCAACAGTTCTTCGTCCTGCTCTGATGAAGTAAATCTTGAGATTGACAAGGGGAAGAAGGAAGGAGAGAGGAAAAGAAGGGTTATTGTGGTGGAGGATGACAGTTTGAATGAGGAAGCAGGTAGCCTTAGCTTAAAGCTTGGTGGACATGATTCTTCAATTGCTGATAGGGAGATAGTAAGTTGGGAAGGAATGAATGGAAAGAAAACCAGAATAGCTGGAGGTACTTCGAATCGAGCTGTTTGTCAGGTGGAGGACTGCGGTGCAGATCTGAGCAGTGCGAAGGATTATCACAGACGTCACAAAGTTTGTGAGATGCACTCGAAGGCTAGTAGGGCACTTGTGGGAAATGTAATGCAGCGGTTTTGTCAGCAATGTAGCAGGTTTCACGTCCTCCAAGAGTTTGATGAAGGAAAGAGAAGCTGTCGAAGACGTTTGGCTGGCCACAATAAAAGAAGGAGGAAAACAAATCAAGATGCTGTTCCAAATAGAAGTTTACCAAATGATGATCAGACTAGTAGTTATCTGTTGATTAGTTTATTGAAAATACTTTCAAATATGCATTATATTGGGTCTGATGGCAAACATGATGAGCATGAGAAGAGCAGATTAGTCATGATTGCTGTGGTCGTGGAGAGTAAATGTTTTGCTTTACCTTGTATATACATACATCTAACACTGCGCTGCCTTCAGAATGCAATGGGAAATCCTGGTGGCATAGCTGAGAGTAGCATGTTTTGGTCAGATCAGACCACGGATCAGGATCTGCTGTCTCATCTTCTAAGGAGCCTTGCTAGTCAAAATGGTGAACAAGGGAGCAAGAGCTTGTCTAACCTTTTGCGGGAACAAGAGAATTTATTGAAAGTAGGGGGTTCACCTGGGAAGTCAGATATGGTTTCCACTTTATTCTCAAACGGTTCTCAAGGCTCTCCAACTGTTATAAGACAAGCACAAACAATAACTGAGATTCAACATCAAGAGATGCATGATACTAGAACTGCTGGTCAACAAACCATGTCTTCTACTAAACCTAGCATTTCAAACAGTCCTCCAGCTTACTCAGAAGCCAGAGACAGTAGTGCTGGACAGATCAAGATGAATAACTTTGATTTGAATGACATTTATATTGACTCAGATGATGGCATGGAAGATATAGAAAGATTGCCTGTCTCTGCAAACCTTGGGACTAGCTCTCTTGATTACCCGTGGGTACAACAAGATTGTCATCAGTCAAGTCCACCTCAAACAAGTCGAAATTCAGATTCTGCATCTGCTCAGTCCCCTTCTAGTTCAAGTGGAGAAGCTCAGAGCCGCACAGATCGAATTGTCTTTAAACTCTTTGGTAAAGAACCAAATGATTTTCCTCTCATACTTAAATCACAGATTCTTGACTGGTTATCCCACAGTCCCACTGACATTGAGAGTTACATACGGCCGGGATGTATTGTTTTGACTATTTATCTGCGTCAGGATGAGGCTGTGTGGGAGGAACTTTGCTATGATCTGACTTCGAGTTTGAATAGGCTTCTGAATGTCTCAGATGATGCTTTTTGGAAAACTGGATGGGTTTACATTAGGGTGCAGAATCAGATAGCCTTCATTTTTAATGGTCAGGTTGTCATAGAAACATCCTTACTGTTTAGAAGCAACAATTATAGTAAGATTTTGAGTGTTAGTCCAATTGCTGTACCGGCATTCAAGAGAGTTCAATTTTCAGTCATGGGTATTAACCTGATTTGCCCAGCCACTAGGTTATTATGTGCTCTAGAAGGGAAATATCTGCTCTGTGAAGATGCTCATGAGCCAACAAATGATGAGCTCCAGTGCGTCCAATTTTCATGTTCTGTCCATGAGATGAATGGAAGAGGATTTATTGAGATTGAGGATCAGGGTTTGAGCAGCAGCTTTTTTCCTTTCATAGTTGCGGAGGAGGATGTTTGCTCAGAAATCTGTGAGCTTGAGCCTCTGCTAGAGTCAGGCAAAACTGATCCTTACAGTGGAGGATCTGGAAAAATTATAGCCAGAAGTCAAGCTATGGATTTTATTCATGAAATGGGTTGGCTTCTCCACAGAAGCCAGTTGAAATCTAGGCTGGTTCACTTAAACTCCACGGCAGATCTATTTCCATTAAAACGGTTCAAGTGGCTCATGGAGTACTCTATGGACCATGATTGGTGTGCAGTGGTGAAGAAACTATTGAACCTACTACTTGATGGAACTGTGGATGCAGGAGATCACCCTTCCCTGTATCTTACACTTTCAGACATGGGTCTCCTTCAAAAAGCTGTAAGGAGAAATAGCAGGCAGTTGGTGGAGTTGCTTTTGAGATATGTCCCTGAGAATATTACTGATAAACTAGGACCTGAAAACAAGGCACCGGTTGACGTTGGGAACCAGAGTTTCTTGTTTAGACCTGACGTTGCTGGTCCTGCAGGTTTGACACCAGTGCACATTGCAGCTGGGAAAGATGGTTCTGAGGATGTATTGGATGCTTTAACCGATGATCCTGGCATGGTGGGAATTGAAGCATGGAAGAGTGCCCGTGACAGCACAGGCTCCACCCCAGAAGATTATGCACGCTTACGTGGCCATTATACTTACATTCACCTGGTGCAGAAGAAAATTAACAAGAGACAAGTAGCAGCAGCTCATGTGTTGGTTGATATCCCCAGCAATCTGACACAGTGCAGTACAAACCAGAAGGAAACAGAGTCATCCACTAGCTTTGAGATCGTAAAGGCCGAAGGAACTCGTGTCCAAGGGTGCTGCAAACTTTGTGATAAAAAGTTGTCTTGTAGAACTGCAGCGGGAAGGTCTTTGGTATACAAACCTGCCATGCTCTCAATGGTGGCCATAGCAGCAGTTTGTGTCTGCGTGGCCCTTCTGTTCAAAAGCTCACCAGAAGTTCTGTACGTGTTCCAACCCTTCAGGTGGGAATCGTTGGATTTCGGAACAAGTTGA 3177 0.4381 MEARFGTEAFHLYGVSSSDLRAVGKRSMEWDLNDWKWDGDLFIASRLTSVPADNVGRQFLPLGSGIPTAGGSSNSSSSCSDEVNLEIDKGKKEGERKRRVIVVEDDSLNEEAGSLSLKLGGHDSSIADREIVSWEGMNGKKTRIAGGTSNRAVCQVEDCGADLSSAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNQDAVPNRSLPNDDQTSSYLLISLLKILSNMHYIGSDGKHDEHEKSRLVMIAVVVESKCFALPCIYIHLTLRCLQNAMGNPGGIAESSMFWSDQTTDQDLLSHLLRSLASQNGEQGSKSLSNLLREQENLLKVGGSPGKSDMVSTLFSNGSQGSPTVIRQAQTITEIQHQEMHDTRTAGQQTMSSTKPSISNSPPAYSEARDSSAGQIKMNNFDLNDIYIDSDDGMEDIERLPVSANLGTSSLDYPWVQQDCHQSSPPQTSRNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLILKSQILDWLSHSPTDIESYIRPGCIVLTIYLRQDEAVWEELCYDLTSSLNRLLNVSDDAFWKTGWVYIRVQNQIAFIFNGQVVIETSLLFRSNNYSKILSVSPIAVPAFKRVQFSVMGINLICPATRLLCALEGKYLLCEDAHEPTNDELQCVQFSCSVHEMNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICELEPLLESGKTDPYSGGSGKIIARSQAMDFIHEMGWLLHRSQLKSRLVHLNSTADLFPLKRFKWLMEYSMDHDWCAVVKKLLNLLLDGTVDAGDHPSLYLTLSDMGLLQKAVRRNSRQLVELLLRYVPENITDKLGPENKAPVDVGNQSFLFRPDVAGPAGLTPVHIAAGKDGSEDVLDALTDDPGMVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQVAAAHVLVDIPSNLTQCSTNQKETESSTSFEIVKAEGTRVQGCCKLCDKKLSCRTAAGRSLVYKPAMLSMVAIAAVCVCVALLFKSSPEVLYVFQPFRWESLDFGTS 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3487 1058 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Glsi02g3487 1058 Gene3D - 788 988 IPR036770 -
Glsi02g3487 1058 MobiDBLite consensus disorder prediction 476 509 - -
Glsi02g3487 1058 Pfam SBP domain 154 227 IPR004333 GO:0003677
Glsi02g3487 1058 MobiDBLite consensus disorder prediction 400 433 - -
Glsi02g3487 1058 MobiDBLite consensus disorder prediction 220 240 - -
Glsi02g3487 1058 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Glsi02g3487 1058 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
Glsi02g3487 1058 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Glsi02g3487 1058 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 78 944 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3487 Glsi-ChrGlsi02 81989853 81997986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3487 1 1058 SBP-box Gene Family AT3G60030 51.753 0.0 933
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Glsi02g3487 SBP 1.5e-29 No_clan