Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3462 ATGGATGCTGATAAGGTGAAAGGCTGTCCTGCAGCAAATCAAAGCGAAGACCACATGGGCATCAGGAAAGGTCCATGGACCGTTGAAGAAGACAACATTCTCGCAAATTACATAGCTAACCACGGTGAAGGTCGCTGGAATTCCGTCGCCCGATGTGCAGGTCTGAAGAGAACGGGCAAAAGTTGCAGATTAAGATGGCTAAACTACTTGCGTCCTGATGTTCGGCGTGGAAATATCACACTCCAAGAACAGATATTAATTCTTGATCTCCATTCTCGGTGGGGCAATAGGTGGTCTAAAATTGCCCAGCAATTGCCTGGAAGAACAGACAACGAGATAAAAAATTATTGGAGAACCAGAGTGATAAAGCAGGCTAAGCAGCTCAAGTGTGACGTCAATAGCAAACAGTTCAGAGACGCCATACGCTACGTATGGATGCCCCGCTTGCTGGAGCGGATTCGGGCCGCATCTGGATACCACCCGAGCTGCCAACCTCCGAAAGAGCTGGACCCAACTGGGCTCCTTTACCAACAGGGGATGCAGGGTTCAGAAACAAGGGGTGTAAAACCAAATTACTCCTCCAGCGCTTCGTATTCAGCAACGGATGTCCAGATTTCGGAGCAAAGCGAATCTTGTGAAATAGTTGGTCATTCTACAGGAAATGGGTCGGTTACCCAAGTGTTAGAGCAGGGGAATACATTGGGTGGTGGGGATTCATTGGAGAATCTATGGAACGATGAGAATGTATGGTTTTTACGACAACAGCTTTGTGATGAGGAAAGAGTTTGTGGGAAGGAAGCCAGCAGATTCGGTTGGAAACGTATCCTCTTAGTATATGCTCTTGCACTGGAAACGGGTGTTCCTATGATGAGAAGTTTATCAGATTGTGGCTCATCAGCAACGCATGGACATGGTAGCGAAGAAGAGACGGTAATAAAGAAAGGTCCGTGGACTGAGGAAGAGGATTCCCTTCTGGCCAACTACATCAACGTTCACGGCGAAGGTCTGAAGAGAACCGGCAAAAGCTGCAGATTAAGATGGTTAAACTACCTGCGTCCAAATGTTCGACGTGGGAACATCACCCTCCAAGAACAGCTCTTGATTCTTGAACTCCATTTCCGCTGGGGCAATCGGTGGTCGAAAATAGCGCAACAGTTGCCAGGCAGAACAGACAACGAGATAAAAAACTATTGGAGGACCAGAGTGGTGAAGCAGGCAAAGCAACTCAAATGTGAAGTGAATAGCAAAGAGTTCAGAGACGCCTTGCGTTTCGTATGGATGCCTCGCCTACTGGAGCGGATCCGGGCCTCATCCGCCTCTGATTCAGGCCCTTCGCCTCACTCTGTAGTTGATGCCCAAGCTCCTTCTTCTGTGTCAGGTGCAGAAGAAGGACCCACTTCATGGCAGCAGATGGAAGTTGAATCAAGCAATGACTTGTGGACAGATGAAAACATATGGTTTTTGCAACAACAACTAGCCGATGAGATTTGA 1491 0.4802 MDADKVKGCPAANQSEDHMGIRKGPWTVEEDNILANYIANHGEGRWNSVARCAGLKRTGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQQLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDAIRYVWMPRLLERIRAASGYHPSCQPPKELDPTGLLYQQGMQGSETRGVKPNYSSSASYSATDVQISEQSESCEIVGHSTGNGSVTQVLEQGNTLGGGDSLENLWNDENVWFLRQQLCDEERVCGKEASRFGWKRILLVYALALETGVPMMRSLSDCGSSATHGHGSEEETVIKKGPWTEEEDSLLANYINVHGEGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILELHFRWGNRWSKIAQQLPGRTDNEIKNYWRTRVVKQAKQLKCEVNSKEFRDALRFVWMPRLLERIRASSASDSGPSPHSVVDAQAPSSVSGAEEGPTSWQQMEVESSNDLWTDENIWFLQQQLADEI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3462 496 Gene3D - 24 75 - -
Glsi02g3462 496 MobiDBLite consensus disorder prediction 1 20 - -
Glsi02g3462 496 Gene3D - 361 402 - -
Glsi02g3462 496 Gene3D - 80 121 - -
Glsi02g3462 496 Pfam Myb-like DNA-binding domain 357 400 IPR001005 -
Glsi02g3462 496 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Glsi02g3462 496 Pfam Myb-like DNA-binding domain 314 351 IPR001005 -
Glsi02g3462 496 Pfam Myb-like DNA-binding domain 76 119 IPR001005 -
Glsi02g3462 496 Gene3D - 312 357 - -
Glsi02g3462 496 MobiDBLite consensus disorder prediction 438 476 - -
Glsi02g3462 496 CDD SANT 316 400 IPR001005 -
Glsi02g3462 496 MobiDBLite consensus disorder prediction 437 476 - -
Glsi02g3462 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 352 406 IPR017930 -
Glsi02g3462 496 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Glsi02g3462 496 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 20 210 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi02g3462 496 ProSiteProfiles Myb-like domain profile. 309 402 IPR001005 -
Glsi02g3462 496 FunFam MYB transcription factor 80 143 - -
Glsi02g3462 496 SUPERFAMILY Homeodomain-like 312 398 IPR009057 -
Glsi02g3462 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
Glsi02g3462 496 CDD SANT 80 119 IPR001005 -
Glsi02g3462 496 ProSiteProfiles Myb-like domain profile. 18 70 IPR001005 -
Glsi02g3462 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 312 351 IPR017930 -
Glsi02g3462 496 FunFam MYB transcription factor 361 424 - -
Glsi02g3462 496 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 74 IPR017930 -
Glsi02g3462 496 SMART sant 75 123 IPR001005 -
Glsi02g3462 496 SMART sant 22 72 IPR001005 -
Glsi02g3462 496 SMART sant 356 404 IPR001005 -
Glsi02g3462 496 SMART sant 313 353 IPR001005 -
Glsi02g3462 496 CDD SANT 25 70 IPR001005 -
Glsi02g3462 496 FunFam Myb transcription factor 23 75 - -
Glsi02g3462 496 SUPERFAMILY Homeodomain-like 19 117 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3462 Glsi-ChrGlsi02 81845991 81853065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3462 298 438 MYB Transcription Factor Family AT2G47190 66.225 2.47e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3462 Myb_DNA-binding 1.2e-16 CL0123