Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3447 ATGGAGAAGAAGGAGATGGCAGTGAAGACGGAGGATGCAATTGGATCCTCTTCATTATCCGGTTACTACGGTTATCCATTTTCTAGCGTATTTGATTTCAATGAAGTGGACAAGAGCTCTTTAGGGTTTATGGAGTTACTGGGTGTGCAGGACTACAGTCCTCTGCTTGATTTGCCGCAGCAAGCATCAACAATCGCTCCCTCTGCTCTCAAAGATCCATCTGACCCTTCCAGAGACTGTTCTGAGGTCTTGAATCAACAACCTGCTACTCCCAACTCTTCATCTATTTCATCGGCGTCCAGCGAGGCAGTGAATGATGAACAGAACAAAACTGTAGACCAAGGAGAAGAACACCACAAGACCAAGAAACAGTTGAAACCCAAGAAGACAAATCAGAAGAGACAGAGAGAACCGAGATTCGCGTTCATGACGAAAAGCGAGGTCGATCATCTGGAAGATGGGTATAGATGGAGAAAGTACGGTCAAAAAGCTGTGAAAAACAGCCCCTTCCCCAGGAGCTATTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGAGTGGAGCGATCTTTCACGGATCCAAGCGTCGTAGTGACAACCTATGAAGGGCAACACACACATCCAAGTCCAGTTATGCCTCGCTCAAGCCTCGCCGGAGCTTCGCTACCACCGGGTGTCCCCCCCGGATGTGCCACCTCCCTTGGTTCTCTAATGGCAGGAAACCTCCTATCCCAGTATCAACCGCACCATCAACAAGAAGTCCTTGTTAATACATTATCGTCTCTGGGCTTTCCTTACACTTATTCAACTTCAAAGAACGCTGCTTTTCCTCAAGAAAGACGCCTTTGTGATTCAGGGGCGACCGCTTTTCTAAGAGACCATGGGCTTCTTCAAGATATTGTTCCTTCCCATATGTTGAAAGAAGAGTAG 933 0.4716 MEKKEMAVKTEDAIGSSSLSGYYGYPFSSVFDFNEVDKSSLGFMELLGVQDYSPLLDLPQQASTIAPSALKDPSDPSRDCSEVLNQQPATPNSSSISSASSEAVNDEQNKTVDQGEEHHKTKKQLKPKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSSLAGASLPPGVPPGCATSLGSLMAGNLLSQYQPHHQQEVLVNTLSSLGFPYTYSTSKNAAFPQERRLCDSGATAFLRDHGLLQDIVPSHMLKEE 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3447 310 Gene3D WRKY domain 136 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g3447 310 ProSiteProfiles WRKY domain profile. 146 211 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g3447 310 SUPERFAMILY WRKY DNA-binding domain 143 211 IPR036576 GO:0003700|GO:0006355|GO:0043565
Glsi02g3447 310 Pfam WRKY DNA -binding domain 152 209 IPR003657 GO:0003700|GO:0006355|GO:0043565
Glsi02g3447 310 FunFam WRKY transcription factor 57 137 211 - -
Glsi02g3447 310 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 85 242 IPR044810 GO:0003700
Glsi02g3447 310 PIRSF WRKY_txn_fact_IIc 1 310 IPR017396 GO:0003700
Glsi02g3447 310 MobiDBLite consensus disorder prediction 79 108 - -
Glsi02g3447 310 MobiDBLite consensus disorder prediction 66 140 - -
Glsi02g3447 310 SMART WRKY_cls 151 210 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3447 Glsi-ChrGlsi02 81728800 81730245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3447 23 310 WRKY Transcription Factor Family AT2G47260 48.795 5.08e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Glsi02g3447 WRKY 1.2e-26 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3447 02 81728800 81730245 Glsi11g0416 11 2750683 2751993 CCT
Glsi02g3447 02 81728800 81730245 Glsi02g3447 02 81728800 81730245 ECH