Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3425 ATGAATCACTGCTTATCAATGGTCTTCCGGCCTTCATCTATTGTCTTCTTGCTGGCACTTGCTGTGCTGATAGTTCTCCTCTCATTGACGCCATGTTGGTACGTTATGGTGAGACGTATCGAGCATCGTGTGAATTTGAACTCAGAAAATTTTCTCTTGGAATTGCAATCTGAAATTGATCACTCGGCTAAACTGTTACACGCAATGAATTCATCCTCAACCAGTTTAGCAAGACTTCTGAGTTCAACACTCAATGAGACTAATATCTCATTCTCTGAAATTGAGACCATAGTGGCTCCAGTGTTGTTTCAAGCATTTGAGACAGTTCCTCTTCTAACCGAAATCTCATACATTGGGATGGAAGGTCTCTTTTTCTCATACTACACAGATCACGATCAAGCACTTGCAATGTACTCTAACTCTTCAATTTCTTCTATCTCGGGAGCTTCAGAAATCGTATATTATATCCAACCTGTACACCGTGACACTGGAGTGCTGTATGGGAAGGCCATAATATATGAGTCCCCTGTCAATGCAAGTTGGATTCAGGAAGCACTCAATAATTCGTATCGATATGCTTCAGTTGGATCCAAGTGGAGCGATGAACATGACCTTTTATACCTTAGTTCAGCTAGAATCTCAAGAACAGGAGTTATCTCTTTAGGGTTTGCAGCAACAGCAATAACTGATTTCATCAATCCTATTGGCCGTGAAGGTGCAAGATTGTATTTGGCTACAAAAGATGGACGAGTGCTTGTAGAAGGAATTCAACATACCCATATGGTATTCTCTAACGATATGGCTTCCTTTCAATCAGTAAAACCAAATGGTGATCAGTTAAGTTATAAGGGCAGTGTCTCATGCAAGGATAAAGCCTCTGCTTCTGTTTTGAATGTTGAGGATATCCAGTATTTGACATGCTGCTCGTCAATTGATATAATGGGAGTAGAATCGGTGTATGTTTTGGCTGTCCCGCAAAATGGATTAGCCAGCTTCGTCCATGAGAGCAGAAAACAGGGATCGGCACTACTGAGTGTGATGATAGTCATGATATTGGTCTCTATCTTCAGTTTTCTGTTCTTAAATGCTATGGTGGCTCGACGAGAGATGCATTTGTGTGCCTCTGTGATCAAACAAATGGAAGCCACTCAGCAAGCTGAGAGGAAGAATATGAATAAGAGCCTTGCTTTTGCTAGTGCCAGCCATGATGTTCGTGCTTCTCTTGCAGGGCTTACTGGTTTGATAGAGATATCCTATGAAGAAGTTATCCCTGGTTCAGAATTGGAGGCCAATTTAAAACAAATGGATTCTTGTACAAAAGACTTACTAGTGATATTGAATTCTATTCTCGATACAAGCAAAATTGAGGCAGGGCAAATGCAGCTTGACGAAGGGGAATTTGATCTCTCACAACTTCTAGAAGATGCAGTTGATTTATACTATCCTGTGGCTATGAAGAAAGGTGTAGATCTTGTATTGGACCACTGTGATGGTTCTGTCACCAGATATTCCCGTGTGAAAGGTGACAGAGGAAAGCTTAAGCAAGTTTTGTGTAATTTACTTAGCAATGCTGTTAAATTTACCGATGAGGGGCACATAGCAGTTCGAGCCTGGGCTCAGAAGCCAAGATTCCAGAACTCAATAATAGCTTCTTCTAACAAATATAGTTTCATGAAGCGTTTGTCATGCTTATTTTACAGGAAAAATGCAGCAGATATTGATCTAGAATTTATGAATTTTATACAAGAAGATCTGAATTGTTTGGAGTTTGTGTTTGAAGTGGATGATACAGGCAAAGGAATTCCTAAAGAGAAGCAGAAGTCTGTGTTTGAGAATTACGTTCAAGTAAAAGAAACTGCTCTAGGACAAGGAGGCACTGGCTTGGGACTTGGTATTGTGCAGTCACTGGTACGCTGGATGCATGGAGATATTGAAATTGTGGACAAGGACATTGGTGAAAAAGGAACATGCTTCAAGTTCAATGTCCTCCTTAAAGTATGTGAGAGAGTCACAGGTGGTAGCACAAGGGAATGTAATGATTTAGTGACTGACAGAAATCAAACTAAAGGCCTGGACATTCACACACCTAGTTCTGGTTCAAGCACCTGTTCCCCTAGTCCCAGGTTAACTATTTTTACCTCTAGTAGGCCAGAGGCTTCTCGTATTGTTCTCTTGATTCAAAATGAGGAGCGTCGAAGGACTACACAAAGGTTCATGGAGAGCTTAGGGATGAAAGTCAAGGTTGTGAAGCAGTGGGAACATTTATTTTACGCTCTCAAGAAGATGAAGCAAAAGGGACACCATTCCAGCCACAGCTCTAAAGGGGCATCAGATTTGAGTTTTCAGTCTACATCTCTGAATTCTAATGCCAGAGCCAAAGGAGTTCCTTTGAGTGCTGTGGATGGAACTGACTATATGCCTTCAGTTTTTAAGAAGACAGACGTTGGAGCTGCCCCCGGTTTCATTTTGCTTGTGATTGATGCAGTTGCAGGACCCTTTTTAGAACTTTGTAGAATAGTATCTGACTTCAGAAGAGGCCTTGGCAATCCTTGTAAGGTTGTTTGGTTAAATAAGCCACTTATGAATAGTGTCAATTTCAAAGCCCTTGATGAGGATGTGTTCGATCCAGATGATATTGTCATATCCAAACCATTTCACGGTACTCGTTTGTTTGAAGTTATAAGGCTTCTACCTGAGTATGGTGGTAACTGGCAAAGCATTTCTGAGAGATCAAAAAGAGAAAGTAGTCATGATAGAGTTAGAAAAACTTTTAGAGATTCGCACTTGTCAAAATACCAGTCACCTGTGTCGGACACAGCAGAAGTTTCCCCAACTGATGGACGACCGTTTCAAGGTGTTAAACAACGAGGCTCTGGTAATTCATCAAGGGGCGAACAATTTTGGAAGGGAACCAAGTCACCTTTTGGGGATCAATCTTTTTTTCATAGTAGGTCCAAATCAAGAAATTCTCCAGGTCATGGAAGCCCAGTTTATGACGGAGAAATACAAGAATGTGGTGACTCAAGCTTCGGCAAACCCTTGGGTGGTAAGAAATTTTTGGTCGCTGAGGACACTGAATATTTACGCAGGATAGTTTTGGCTACTCTGATACAGCTCGGTGCCACTGTTGAGCAGTGTGAGAATGGTGAACAAGCTGTGAAGCTAGTTGAAGAGGGTCTAATTGGGGCTTTTTCCAATCTTCCTTATGATTACATCTTAATGGACTGTGAGATGCCGTTAATGGACGGGTTTGAGGCCACAAGGCGGATAAGGGAGACGGAGAAAGCCTATGGTATTCACATTCCTATCATTGCATTAACTGCTCATACATCAGGGAAAGAGGCAAAAATGACCATAGAGGCTGGAATGGACGTTCATTTAAGCAAACCAATTAGGAAAGAGCATTTACTGGAAGCTATCAGATGCGTACACAAAGGGAACCAGCTTACAGGAAGCGCTAGGAAGGTGAAGGATGGGTCAGCATTAGTTGCAGAAGCTCTTGCTTTAAAGGAAGCCCATCGGTTAGTAGTCAACCTGAATTTGAAAAATGTTGAGTTTAAATCAGATTGCAATGACTTAATTGATGCATCGTTTCATGGTAATCATTCTGTTGTCCAAATATCTACTATTAAGGCTAATTGTGAAGAACTCCTTCCTTCTGTTCCAGATATTGATTCCCTTTTTGCTACATTTTATATGGGACTTAAACCTCAGGAAATGCTTGTATTACGTAAACAATTGCATGCGTTCTACCTAATTCATCCTGGTCAGACAGCTGCATTTGGATGTGACTTAGTGTGAGTGGGTGTTATGATGGAAGTTGAATTATGTGATGTCATGCCTCCTAAACCTCAGGTTAAGGCTACACTTTGCCTTGGCACGGAGTTTTATTCTGTTCAGGCGGACAAAGGTTGTCTATCAGAGCAATTAGTTTCATTGAAAGAGGAAAGCATGATCATATTGAAGCATTTTATAACAAAGCATAATGTTCCTCGCGATGTTCCTGATGAATTGGTAGAAACTTCTTCAGAAGATGATGGAGCATAA 4047 0.4114 MNHCLSMVFRPSSIVFLLALAVLIVLLSLTPCWYVMVRRIEHRVNLNSENFLLELQSEIDHSAKLLHAMNSSSTSLARLLSSTLNETNISFSEIETIVAPVLFQAFETVPLLTEISYIGMEGLFFSYYTDHDQALAMYSNSSISSISGASEIVYYIQPVHRDTGVLYGKAIIYESPVNASWIQEALNNSYRYASVGSKWSDEHDLLYLSSARISRTGVISLGFAATAITDFINPIGREGARLYLATKDGRVLVEGIQHTHMVFSNDMASFQSVKPNGDQLSYKGSVSCKDKASASVLNVEDIQYLTCCSSIDIMGVESVYVLAVPQNGLASFVHESRKQGSALLSVMIVMILVSIFSFLFLNAMVARREMHLCASVIKQMEATQQAERKNMNKSLAFASASHDVRASLAGLTGLIEISYEEVIPGSELEANLKQMDSCTKDLLVILNSILDTSKIEAGQMQLDEGEFDLSQLLEDAVDLYYPVAMKKGVDLVLDHCDGSVTRYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHIAVRAWAQKPRFQNSIIASSNKYSFMKRLSCLFYRKNAADIDLEFMNFIQEDLNCLEFVFEVDDTGKGIPKEKQKSVFENYVQVKETALGQGGTGLGLGIVQSLVRWMHGDIEIVDKDIGEKGTCFKFNVLLKVCERVTGGSTRECNDLVTDRNQTKGLDIHTPSSGSSTCSPSPRLTIFTSSRPEASRIVLLIQNEERRRTTQRFMESLGMKVKVVKQWEHLFYALKKMKQKGHHSSHSSKGASDLSFQSTSLNSNARAKGVPLSAVDGTDYMPSVFKKTDVGAAPGFILLVIDAVAGPFLELCRIVSDFRRGLGNPCKVVWLNKPLMNSVNFKALDEDVFDPDDIVISKPFHGTRLFEVIRLLPEYGGNWQSISERSKRESSHDRVRKTFRDSHLSKYQSPVSDTAEVSPTDGRPFQGVKQRGSGNSSRGEQFWKGTKSPFGDQSFFHSRSKSRNSPGHGSPVYDGEIQECGDSSFGKPLGGKKFLVAEDTEYLRRIVLATLIQLGATVEQCENGEQAVKLVEEGLIGAFSNLPYDYILMDCEMPLMDGFEATRRIRETEKAYGIHIPIIALTAHTSGKEAKMTIEAGMDVHLSKPIRKEHLLEAIRCVHKGNQLTGSARKVKDGSALVAEALALKEAHRLVVNLNLKNVEFKSDCNDLIDASFHGNHSVVQISTIKANCEELLPSVPDIDSLFATFYMGLKPQEMLVLRKQLHAFYLIHPGQTAAFGCDLVXVGVMMEVELCDVMPPKPQVKATLCLGTEFYSVQADKGCLSEQLVSLKEESMIILKHFITKHNVPRDVPDELVETSSEDDGA 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3425 1348 MobiDBLite consensus disorder prediction 689 708 - -
Glsi02g3425 1348 Gene3D - 379 458 - -
Glsi02g3425 1348 SUPERFAMILY CheY-like 1016 1154 IPR011006 -
Glsi02g3425 1348 MobiDBLite consensus disorder prediction 935 1002 - -
Glsi02g3425 1348 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 380 460 IPR036097 GO:0000155|GO:0007165
Glsi02g3425 1348 ProSiteProfiles Histidine kinase domain profile. 399 666 IPR005467 -
Glsi02g3425 1348 SMART HisKA_10 392 458 IPR003661 GO:0000155|GO:0007165
Glsi02g3425 1348 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 447 661 IPR036890 -
Glsi02g3425 1348 SMART REC_2 1017 1140 IPR001789 GO:0000160
Glsi02g3425 1348 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 508 664 IPR003594 -
Glsi02g3425 1348 Pfam Response regulator receiver domain 1020 1141 IPR001789 GO:0000160
Glsi02g3425 1348 Gene3D - 459 671 IPR036890 -
Glsi02g3425 1348 Gene3D - 1003 1148 - -
Glsi02g3425 1348 CDD REC_hyHK_CKI1_RcsC-like 1019 1140 - -
Glsi02g3425 1348 PRINTS Bacterial sensor protein C-terminal signature 608 618 IPR004358 GO:0016310|GO:0016772
Glsi02g3425 1348 PRINTS Bacterial sensor protein C-terminal signature 590 604 IPR004358 GO:0016310|GO:0016772
Glsi02g3425 1348 PRINTS Bacterial sensor protein C-terminal signature 624 642 IPR004358 GO:0016310|GO:0016772
Glsi02g3425 1348 MobiDBLite consensus disorder prediction 954 992 - -
Glsi02g3425 1348 ProSiteProfiles Response regulatory domain profile. 1018 1144 IPR001789 GO:0000160
Glsi02g3425 1348 PANTHER TWO-COMPONENT HISTIDINE KINASE 54 1141 - -
Glsi02g3425 1348 SMART HKATPase_4 508 666 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3425 Glsi-ChrGlsi02 81596205 81604456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3425 10 1133 Histidine Kinase Gene Family AT2G47430 40.590 0.0 765
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Glsi02g3425 HATPase_c 4.5e-24 CL0025