LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3413	ATGGTTGGCCTGATGGGTGCACAATTTTCTAAGCCTTTAGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATGGGAGATGTATGAGCTTGCCAAGAGATTAAAGACAATAAAGTTAATTAATCATCGTTGGTTGGAAGATTGCTTAAAGGATTGGGCACTTCTTCCTGTAGATAAATATAACAAGAGTGGTTATGAACTAGAGTTTATGGAGGCAGAGGCAAAGGACTCTCAAGAAGAAGCTGAAGATTCCATGCTGGGAAAATCTGAGGGAAGAGTTATAAACAAGAAAACCCTTGGTTCAGATTTTGGTATAGCTATGACCCATGTATTGCCAGAATCAGTGAGAGATGCGTCAAATCCCTTCCTGGATTCTACTGCTCCACTGAAATCAAATCAAGGAGGAGACTCGTTATTTAATCCCGAAAATGAGAATAGATCTGATCAAGCCTTAAGCTTTCATTATGTTGATAATGTAAAGATAAACTGTCAGGATACAGTTGTTTCAAGGCATGCCACATCAGGTCAGCTACCTGAAATATATGTTAATACTTCTGCACCAGGGAATACCAATGTTCAAAACCATTTGGCTGCCTCATTCATGGCATTCCTGAAATTGCAAGTTCATCTGGATTTTGGCACTTCTGAATCTAGGAAGTTGGTAAATGACTTGAGATCAAATTCTGAAAGTGCTAAAGAACTTGGACATTCAGAGAGAAAAAACAGTGAATTAACTTACTCTAGGAAAAAAAACAAGGGGCAACATGGAAAGACAAGGGACAGAATCAACTCTCCTTTTGAAGATTCTGGGAAAGGAGGCGGTTTTATTAATGGGGTAGAGGTAGAGCCAATGAATTTATTGCCTCAAAAGAGGATACCTGAGGCTTCTACTAAATTAAAGTCAAGGAAGATGACTCCTGAGGAAAAGTTATCCGTTGAAAGAATTCCATCAACAAATGGTAAAATTCAGAGGCTAAATTTGACATCTCTGATCAATGAACCACCTGAGACTGAAGACCATTTTTCTGTTAGCAAAGATGGCATAAAGAATTCAAAGGATTGTTCAATTCCCAAATCTGCAGCTCTTACTTCCAACTCACTTGTCAATGATTATGTGCCTTTCTCAGAAGGTGCAAGCTCACAATCTGCGCAATGTGATAATGCCTATCAAAATTCAGCTCAAACATCTGGCCTGGGCATAGCTGAGTCTAAAACTAATGACGAGCCTACTACCACAGATTTTGGCATGGACGAAGTAGCACATGATGGTAAAAGAGCACAGCAACAGAATATGAAGAAAGATCTTGAGTGTTCACCCCCAAGTGCCACTCCTAAACAGAAGGGTTCTCTTTCCGTGAATAAAACTGCCCCTCAAGGTGATGGTGTAAATGGATTCAGTGGATGCGAAGAGACAGCAATTAGTGATGCCAAGATGTTTCAGGCATCCCCTCGAATCACAGATGTTGAAAAATCATTGGAGCAAGTGAATGTTGTAAATCTACAGAGAATGCTGCTAGCAGAGATGAGTTTCTGGATGACGAAACAGATGCTCCAGATGACAAATGTGATTATGAGTTGGGAGTGGCACATGATGAAAAGAAGTAGAACCAAGAGGAAGAGCAAAGTTTTCAAGGATGTGTTGAAATCTGAGGAGGCTGTAGGAGGGGTAGAGATTCATTGTGAGAGAAAATATGAGGTAGAGATGGAAACACTGGAAAAATTGTCGCTTCCTGCAAAAAATAACTGCTTTCTTGCACTAGCACATAAGTCACAGAATTTTCTTGAAATTGAGAAAGAGAATATACCAATTGATGTAGTCAGGCAGGGAAATCTTTGGCAGAGGAGTCCTGATACTATGAAGCGTGTTATCAAAGCTGGAGATGGAACAATATTAGCAACTTCTCCTTATACTCGCTTCCTTGACACCGGGATCGACTATGCGATCGTTAGTGCTGGCATGCCACGGGTTGATCTGTGGGTCCAGTGGTTGTCCAGACTGCAACAAATTTGGAAACTGCTCAAACTCTCCTAG	2034	0.4056	MVGLMGAQFSKPLVANKVTHLICYKWEMYELAKRLKTIKLINHRWLEDCLKDWALLPVDKYNKSGYELEFMEAEAKDSQEEAEDSMLGKSEGRVINKKTLGSDFGIAMTHVLPESVRDASNPFLDSTAPLKSNQGGDSLFNPENENRSDQALSFHYVDNVKINCQDTVVSRHATSGQLPEIYVNTSAPGNTNVQNHLAASFMAFLKLQVHLDFGTSESRKLVNDLRSNSESAKELGHSERKNSELTYSRKKNKGQHGKTRDRINSPFEDSGKGGGFINGVEVEPMNLLPQKRIPEASTKLKSRKMTPEEKLSVERIPSTNGKIQRLNLTSLINEPPETEDHFSVSKDGIKNSKDCSIPKSAALTSNSLVNDYVPFSEGASSQSAQCDNAYQNSAQTSGLGIAESKTNDEPTTTDFGMDEVAHDGKRAQQQNMKKDLECSPPSATPKQKGSLSVNKTAPQGDGVNGFSGCEETAISDAKMFQASPRITDVEKSLEQVNVVNLQRMLLAEMSFWMTKQMLQMTNVIMSWEWHMMKRSRTKRKSKVFKDVLKSEEAVGGVEIHCERKYEVEMETLEKLSLPAKNNCFLALAHKSQNFLEIEKENIPIDVVRQGNLWQRSPDTMKRVIKAGDGTILATSPYTRFLDTGIDYAIVSAGMPRVDLWVQWLSRLQQIWKLLKLS	677

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3413	677	ProSiteProfiles	BRCT domain profile.	1	63	IPR001357	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	299	318	-	-
	Glsi02g3413	677	SUPERFAMILY	BRCT domain	2	62	IPR036420	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	395	413	-	-
	Glsi02g3413	677	PANTHER	BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED	611	662	IPR044254	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	224	275	-	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	395	462	-	-
	Glsi02g3413	677	Pfam	twin BRCT domain	2	45	IPR001357	-
	Glsi02g3413	677	Gene3D	BRCT domain	1	92	IPR036420	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	125	145	-	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	224	251	-	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	433	461	-	-
	Glsi02g3413	677	MobiDBLite	consensus disorder prediction	415	432	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3413	Glsi-ChrGlsi02	81535242	81539308	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3413	1	87	Core DNA Replication Machinery Family	AT4G02110	70.787	2.22e-34	139