Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3406 ATGGGAAGGGCACCTTGCTGTGAGAAAGTGGGATTGAAGAAGGGAAGGTGGACAGCAGAGGAGGATCAGATCTTGATCAACTACATTCAGGCTAATGGGGAAGGGTCTTGGAGGTCACTCCCCAAGAATGCAGGATTACTAAGGTGTGGGAAGAGTTGCAGACTAAGATGGATTAACTATTTGAGAGCTGATCTTAAAAGAGGCAACATTTCCGCTGAAGAAGAAGAGATCATCATAAATTTGCATGCTTCCTTGGGCAACAGGTGGTCTTTGATAGCACGTCAGTTGCCAGGAAGAACGGACAACGAGATAAAAAACTACTGGAATTCTCATTTGAGCAGGAAAATTCACAGCTTCAGGAGGCCAGCTTCTACACAGACCCTGCCGGTGATCAACGACAAATTAAGCATTCCACCCATGCGAAAAGGTGATAGAACCAGTCTTGGGACCACGAAGAAGAACCAGAGCAACACCCAAAAGGAGATAGATAATAATCCCCAGCATATAATTGAAGCAGTCCCAGTGCCAACCACCCCAACACTAGTGAATGAGAGCCTGCCTAGTGCCATAGAGAATCTCATGGTTATGGAGCCTGACGCAGAAGACAAGGAAGAGAGAGAAAAACTCGCAGAGCCAAATTTCTATCAAGAAACTGAAGGAAAGAGAGGAGAGTTGCAGGTAGCTGCTACAACAAACGAAGTTCAAATTTTAGGAGCATGTAATGAAGAACGCATTGATGGTGGTGGGGCGTTATGTTTTAATGAGGAGGTGGACAGTTGGTTGGCGGAAGGAGATGAGGTTTTGAGGTTGAGTGAAGAAAGACAGGTCAGCAATGACAACGGGGTTACGTGTCCTAACAAAATGACAAGTAATGAGGAAGTAGAGAGCGGGGAGTGGTATTCTTCCTCTGCCGATTTTGGTGACAACTGGGATTGGGAGAGTTTCCTTCAATTGAATCACAATGAGTCTGAGTCATTCCAGGAGAAACAAAACCTCCTCTCGTGGCTGTGGAAAGATGATGATTGGGAGAGCGATTCTCTGAAATTCGGAGAAATAGATCTTGAGAAACAAAATGCTATCGTTCCTTGGTTCCTCTCTTAA 1101 0.4523 MGRAPCCEKVGLKKGRWTAEEDQILINYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEEEIIINLHASLGNRWSLIARQLPGRTDNEIKNYWNSHLSRKIHSFRRPASTQTLPVINDKLSIPPMRKGDRTSLGTTKKNQSNTQKEIDNNPQHIIEAVPVPTTPTLVNESLPSAIENLMVMEPDAEDKEEREKLAEPNFYQETEGKRGELQVAATTNEVQILGACNEERIDGGGALCFNEEVDSWLAEGDEVLRLSEERQVSNDNGVTCPNKMTSNEEVESGEWYSSSADFGDNWDWESFLQLNHNESESFQEKQNLLSWLWKDDDWESDSLKFGEIDLEKQNAIVPWFLS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3406 366 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 197 - -
Glsi02g3406 366 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Glsi02g3406 366 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Glsi02g3406 366 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Glsi02g3406 366 MobiDBLite consensus disorder prediction 137 160 - -
Glsi02g3406 366 CDD SANT 16 61 IPR001005 -
Glsi02g3406 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Glsi02g3406 366 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Glsi02g3406 366 FunFam Myb transcription factor 11 67 - -
Glsi02g3406 366 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Glsi02g3406 366 Gene3D - 11 67 - -
Glsi02g3406 366 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Glsi02g3406 366 CDD SANT 80 112 IPR001005 -
Glsi02g3406 366 Gene3D - 70 134 - -
Glsi02g3406 366 SMART sant 13 63 IPR001005 -
Glsi02g3406 366 SMART sant 66 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3406 Glsi-ChrGlsi02 81493792 81495701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3406 1 153 MYB Transcription Factor Family AT2G47460 71.154 2.29e-74 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi02g3406 Myb_DNA-binding 5.2e-13 CL0123