Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3401 ATGTCCGATCTTAATCCCACTTCACCACCAAAACTGTTCGGGTTCCCACTAACAGAGCAGGAAGAATTTCCTAAAAGGAAATATGATCTCGGAGAAGAAAGGAAATTCAGGTGCCAGTATTGTCACCGAGCATTTGCGAACTCGCAGGCGTTAGGGGGTCACCAAAATGCACACAAGAGGGAGCGCCAAAGAACTAGACGTTTCTTTGTCCAGAATGATCCCATGGGGTTCATATCGGTTGCACCTGTAATCACCCCACATTCCCCGGTACCCACCTTTTACTTAGGAGACTTGACTAGCAGCAACCCAATAGCCAAGTATGAACCTCAACACTTAATGTCAAGACCCATTTTGATTCCAGCCACATATAACAGTACTAGTTCAAGGTTTCCTTTTCAGTTGTATGGGTCACCGACCGTACTGCAATCTGCTCCTAATGTTGGTGAATTTTCTACTAAACTGCCAGAGAGGGATGCAGGTGTTAATGTAGATGTCCATCTAAAATTGTCTCTGTCAAATTAG 522 0.4464 MSDLNPTSPPKLFGFPLTEQEEFPKRKYDLGEERKFRCQYCHRAFANSQALGGHQNAHKRERQRTRRFFVQNDPMGFISVAPVITPHSPVPTFYLGDLTSSNPIAKYEPQHLMSRPILIPATYNSTSSRFPFQLYGSPTVLQSAPNVGEFSTKLPERDAGVNVDVHLKLSLSN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3401 173 ProSitePatterns Zinc finger C2H2 type domain signature. 38 58 IPR013087 -
Glsi02g3401 173 SUPERFAMILY beta-beta-alpha zinc fingers 32 63 IPR036236 -
Glsi02g3401 173 Gene3D Classic Zinc Finger 23 74 - -
Glsi02g3401 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 36 63 IPR013087 -
Glsi02g3401 173 PANTHER ZINC FINGER PROTEIN 5 8 171 IPR044299 GO:0010090
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3401 Glsi-ChrGlsi02 81466211 81466732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3401 9 78 C2H2 Transcription Factor Family AT5G06650 45.000 4.18e-16 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3401 None None None