Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3397 ATGTCCTCCGGCATTCGAAAACTGAACGAGTATTGTTCCAACCGCAGCCAAAGTTGCATCACTCTTAGCAAAATTAAGCCTGATTTACCGCTTCTGGTAATGGATGTTCAAGCGGAGAAAAGCTGTAGGGATTGCCACACAACCACGACCCCTCTGTGGAGGCTCGGTCCAGACGGGCCAAGGTCTCTTTGCAACGCATGTGGGCTAAGATATAGAAAGAGGAGGAGGGCTCTGCTTGGCTTGGATAAAGGAGGAGCAGAGGAGAGCAGGAAGAGGAATAGAACAAGCAAAAGCGGTAAGGTGGGAGTTCTACTGGATACATCACTTGGAAGGCAATTGAAGTTAAAAGAGGAAGAAGAAGCGGCCATATTATTGATGGCTCTTTCTTATGGCTCTCTCTCCCAAAAAAGGGGTAGGGGTAATTCAAGCATTTATGATTTATTGTCGTTGTGCTTCCGAGCCTATCTCTATACTTCGGTTGCAAACTTCAATGACAAAATATTGGATAGTATTGCTCCTGACTCCTCAGTATGCAGTGGGTACTCCAGAAAAGAAGGTCCCGACGAGGGTTGCATACAGTTTGTGTTTAAAGTCCCTCGTTTCCTTTTTCTTCAAGTTGTTCCTAGTCTCGTGTTCTCTTCAATCATTATCGTCTCCAACTCCACTTTCAGAATTAAGACTCCGAAACGACAGAATCAAAGCGGTCAAGAAAACAAGAAGATGCAGTCAAGACTAGCAGATACGGCAAGAAGATCGCTTCGTATCTTTTTTTCAGCCAATAATCGTACTCTTGGGCGAGGATTTTGCTCTGCCTCGCGGACTCAGACGGCAGACCCTGCCATTCATTCTGGAGAACGAGAAGCTGGTCCTTCTGTTCACAGGGGAAAACCCCAAGTAAGTATGGCCATTTTCCCTCAAGCTGAAACTAAATTTCGAATCTTTACGCATGGACACTTGAGTTTTCAAACTGATATTATATGCGTATCTATATTGCAGGGTACGAAAAGCGAGACAAGTGCCAAGTTTGCGGAAACAGAACACATACCCAGAAAAGAAGACGAGCCTTTTGTGTATCCGAAATCTCTTCATGAATCTTCCCTGAAACTAAAGAGTACGGGGGTGAACCAGCGATTGGACCCAACCCTTCAACAAAAGCGGAAGCAGGGAACCATACCATTAGAAGACGTGAGCTGTGCTGGTCTAGATGGAACTCCATGGCCAGAGGAGGAGAGAAATAGCAAGGAGGATGTAGAGGATGAGAAAGAGTACTATGAACATCACAAAGCGTCACCCTTGTCGGAAATAGAGTTCGCAGATTCTCGGAAGCCTATTACTCGTGCGACGGACGGGACGGCGGACTCGGGAGTCGGTGGGGATGTGATTGGTTGGAGGCCGGAGCAACTGGACACTGCGGAGGAGGCGCTGAGGAGGGCTACGGAGATATGGAGGCAGAATGCGATGCGTGGTGACCCGGACGCCCCACATTCAAGGGTTCTCAGAGCTCTTCGCGGCGAAGATTTTTAA 1524 0.4751 MSSGIRKLNEYCSNRSQSCITLSKIKPDLPLLVMDVQAEKSCRDCHTTTTPLWRLGPDGPRSLCNACGLRYRKRRRALLGLDKGGAEESRKRNRTSKSGKVGVLLDTSLGRQLKLKEEEEAAILLMALSYGSLSQKRGRGNSSIYDLLSLCFRAYLYTSVANFNDKILDSIAPDSSVCSGYSRKEGPDEGCIQFVFKVPRFLFLQVVPSLVFSSIIIVSNSTFRIKTPKRQNQSGQENKKMQSRLADTARRSLRIFFSANNRTLGRGFCSASRTQTADPAIHSGEREAGPSVHRGKPQVSMAIFPQAETKFRIFTHGHLSFQTDIICVSILQGTKSETSAKFAETEHIPRKEDEPFVYPKSLHESSLKLKSTGVNQRLDPTLQQKRKQGTIPLEDVSCAGLDGTPWPEEERNSKEDVEDEKEYYEHHKASPLSEIEFADSRKPITRATDGTADSGVGGDVIGWRPEQLDTAEEALRRATEIWRQNAMRGDPDAPHSRVLRALRGEDF 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3397 507 Pfam GATA zinc finger 42 76 IPR000679 GO:0006355|GO:0043565
Glsi02g3397 507 Gene3D - 37 101 IPR013088 GO:0006355|GO:0008270
Glsi02g3397 507 ProSiteProfiles GATA-type zinc finger domain profile. 36 72 IPR000679 GO:0006355|GO:0043565
Glsi02g3397 507 CDD ZnF_GATA 41 94 IPR000679 GO:0006355|GO:0043565
Glsi02g3397 507 PANTHER OS07G0675200 PROTEIN 241 299 - -
Glsi02g3397 507 MobiDBLite consensus disorder prediction 445 464 - -
Glsi02g3397 507 MobiDBLite consensus disorder prediction 486 507 - -
Glsi02g3397 507 MobiDBLite consensus disorder prediction 275 296 - -
Glsi02g3397 507 MobiDBLite consensus disorder prediction 493 507 - -
Glsi02g3397 507 MobiDBLite consensus disorder prediction 395 419 - -
Glsi02g3397 507 ProSitePatterns GATA-type zinc finger domain. 42 67 IPR000679 GO:0006355|GO:0043565
Glsi02g3397 507 SMART GATA_3 36 86 IPR000679 GO:0006355|GO:0043565
Glsi02g3397 507 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 34 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3397 Glsi-ChrGlsi02 81442578 81445916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3397 39 133 C2C2-Gata Transcription Factor Family AT5G49300 48.182 5.82e-23 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Glsi02g3397 GATA 3e-17 CL0167