Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3395 ATGGCAAAAGCAAATGCGAAGGAGAAATCCACTTCCACTGCCCTCCACCCTCCTTACTTCCATATGATAGCGGATGCCTTGTCTACATTGAATGAACGCACAGGATCAAGCCAACAAGCAATAGCCAAATTCGTCGAGGACAAACACGGGAAAGTGCTGCCCCCTAATTTCAGGACATTGCTCTCTGTTCAACTGAAGAAGTTCGTCAAATCGGAGAGGTTATTCAAAGTGAAGAATTCCTTCAAGATCTCTCCCGCGGAGAAGCTGAAATTGGCAGTCGAGAAAAACAAAACTGCCGAACCCTCCGACAAGAGTGCCAAGAAGGTCACAGAGAAGGGGACGAAGACCAAGAGGCTGAGTCACGTGAAGACGCCGGAGGCTCTCAAGAAGGTCGTCAAGGATACTAAGAAGAAGCCGGTAACATCCTCATCAGGGAAAGTCAAGCGTCTGAGTCAGGTTAAGACCCCTGAAGCAATGAAGAAGAAGAAGAAGACTACTTCCAAACCCATGAATTCTTCCAGGCCTGCAAAGAAGTGGCCCAAAGGCCCACTTGACGCGGGATTGGCATCTAGAACAGCTGTGGCAATTAAAGAGGTTCCACCACCCTCGATTTTTATTGAATTTTGGTTGGTGGTAGCTTTGAATGTGTGCTTGGGGGAGATATCTTCTACTTACATGATTGTGAAATGGCAGATATATATTACAGTGGAGAAATTGGTATTGGCAATGGCAAATGGGAATGCTCAAGCGTCAGCCATGACTCCAAGTGTAGCTATGGAAATTAAAGACGGCTCAATATTTATTTAG 807 0.461 MAKANAKEKSTSTALHPPYFHMIADALSTLNERTGSSQQAIAKFVEDKHGKVLPPNFRTLLSVQLKKFVKSERLFKVKNSFKISPAEKLKLAVEKNKTAEPSDKSAKKVTEKGTKTKRLSHVKTPEALKKVVKDTKKKPVTSSSGKVKRLSQVKTPEAMKKKKKTTSKPMNSSRPAKKWPKGPLDAGLASRTAVAIKEVPPPSIFIEFWLVVALNVCLGEISSTYMIVKWQIYITVEKLVLAMANGNAQASAMTPSVAMEIKDGSIFI 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3395 268 Gene3D - 11 101 IPR036388 -
Glsi02g3395 268 Pfam linker histone H1 and H5 family 16 83 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3395 268 PANTHER HISTONE H1 7 176 - -
Glsi02g3395 268 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3395 268 PRINTS Histone H5 signature 151 168 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3395 268 PRINTS Histone H5 signature 173 192 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3395 268 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Glsi02g3395 268 MobiDBLite consensus disorder prediction 94 184 - -
Glsi02g3395 268 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3395 268 MobiDBLite consensus disorder prediction 94 141 - -
Glsi02g3395 268 CDD H15 16 95 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3395 268 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Glsi02g3395 268 SUPERFAMILY "Winged helix" DNA-binding domain 13 95 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3395 Glsi-ChrGlsi02 81434454 81436767 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3395 17 97 Single Myb Histone (SMH) Gene Family AT1G72740 37.037 1.63e-09 55.5