Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3388 ATGGCCACCAGAAATCGAACTGTACAGTACAGAAAGCACAGAGACGCCGTCAAGAGCGTGCGCGCCCCTTTGTCTTCCTCAGCGTCTGGTTTCAACGGTCCTGTCATTGAAATGGTGAGCACTTCACTTCTTCGTTCCAACCGATCTTCATATACGCCTCTAAGCACCGAAGATCCAGGTCCCTCGAGAGATGCGTTTACTGTGGGGTTACCACCAGCTTGGGTGGATGATTCTGAAGAAATAGCTAAAAATATACATTGTGCTCGGGTTAAAATGTCTGAGCTAGTCAAAGTTCATGCTAAGGCATTAATGCCTTCCTTTGGTGATGGCAAAGAAGATCAACATCAGATTGAGGCTCTCACCCAGGAGATTACAGCTCTCTTGAGAAAGTCTGAAATGAAGCTAAAAAAACTTTCTGCCCCCAGTGTATCCTCTGAGGATTCAAATGTCAGAAAAAATGTGCAGCGCTCCCTTGCTACAGACCTTCAGAACCTCTCAATGGACCTCCGGAGAAAGCAGTCAACATATTTGAAACGGTTGCAGCAGCAAAAGGAGGGTTGTGATGGGATTGACTTGGAGATGAACTTGAATGGGAATAAATTTGGTTTGCAGGATGATGACTTTAATGATGTGGGTCTCAGTGAACATCAATTAACAAAGCTAAAGAAAAGCGAGCAGTTCTCAGAAGAAAGGGAAAGAGAGATTGAACAGGTTACCAAATCAGTGAATGAACTGGCTCAGATCATGAAAGATCTCTCTGTTCTTGTGATAGACCAGGGAACAATTGTGGATAGGATTGACTACAACATTCAGAGTGTTGCTACATCCGTCGAAGAGGGCTTTAAGCAGTTGGAGAAGGCAGAGAGAACGCAAAAAAAAGGAGGAATGGTTATGTGTGCGACAGTGCTTGTTATAATGTGCTTCATCATGCTAGTCCTCTTGATATTCAAGGAGATATTATTTTAG 966 0.4379 MATRNRTVQYRKHRDAVKSVRAPLSSSASGFNGPVIEMVSTSLLRSNRSSYTPLSTEDPGPSRDAFTVGLPPAWVDDSEEIAKNIHCARVKMSELVKVHAKALMPSFGDGKEDQHQIEALTQEITALLRKSEMKLKKLSAPSVSSEDSNVRKNVQRSLATDLQNLSMDLRRKQSTYLKRLQQQKEGCDGIDLEMNLNGNKFGLQDDDFNDVGLSEHQLTKLKKSEQFSEEREREIEQVTKSVNELAQIMKDLSVLVIDQGTIVDRIDYNIQSVATSVEEGFKQLEKAERTQKKGGMVMCATVLVIMCFIMLVLLIFKEILF 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3388 321 SMART SynN_4 65 181 IPR006011 GO:0016020
Glsi02g3388 321 SUPERFAMILY t-snare proteins 70 280 IPR010989 GO:0016020|GO:0016192
Glsi02g3388 321 PANTHER SYNTAXIN 78 306 IPR045242 -
Glsi02g3388 321 SMART tSNARE_6 220 287 IPR000727 -
Glsi02g3388 321 FunFam Syntaxin-43 71 279 - -
Glsi02g3388 321 Gene3D - 71 279 - -
Glsi02g3388 321 CDD SNARE_syntaxin16 229 286 - -
Glsi02g3388 321 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 225 287 IPR000727 -
Glsi02g3388 321 Pfam SNARE domain 261 313 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3388 Glsi-ChrGlsi02 81412351 81416307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3388 1 321 SNARE and Associated Proteins AT5G26980 71.560 6.29e-163 455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3388 02 81412351 81416307 Glsi02g3388 02 81412351 81416307 ECH
Glsi02g3388 02 81412351 81416307 Glsi11g0269 11 1811057 1814575 ECH