Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3366 ATGATTGAGGTTGTCACAATTCTTTCCATTCCTCCCTCACTTTCTCCCTTTCCAATTTTCACCATGTATAACCTCAGAAGACGAACAGCCACTTTGCTCGCTCTTGTACCATTTTTCTCTCTAGTTCTTGGGCTACTATTTTCGGTTCCCCATTTCACCAACTCCCCCAAAACAACCAAATCCCCAGAAATACACCTCCATTTTTCAAAACACCTCCAAGTAGCCCACTCCATCTGCCAAGGAACACTCTACCCAGACCTCTGTGTCTCAACTCTCGCTTCCTTCCCAGATCTTACCTCCAAATCTGTCCCGGAAATGATCTCCTCCGTCCTCAATTCCACCGTGTACGACGTCGAATCATCGTCCTCCAACTGCAGTGACCTCCGAAAGAATCTCAGAAATCTAGACCCACTTGAACACAGAGCTCTGGATGATTGTGTCAGACTGTTTGATGACACCGTTGAGGAGCTCAAGGCCACCATTGCCGTTCTCTCGAACAGCGAAATGGGTTCCCAGCGCTACCATGACCTGCAGACTCTGCTAAGCGGCGCAATGACTAATTTGTACACGTGCCTCGATGGGTTTGCTTACAGTCAAGGGAATGTGAGAGACAAAATCCAGGAGAGGTTGTTGGAGATCTCCCATCAAGTTAGTAACTCATTAGCCATGCTGAAGAAAGTGAGTGGAGTGAAGAAAGCGTCCAAGTCTGAGGTGTTCCCTGAGTACGGGAAGATGAAGCACGGGTTCCCTTCATGGGTGTCGCCCAAAGAACGAAAGCTGCTTCAAGGTGGTGTGAATGAGATCAGGTTCGATCTTGTGGTGGCTAAAGATGGGACGGGCAATTTCACCACTATCGGGGAAGCAGTGGCTGCAGCTCCAAACTCCAGCACAACCAGGATTGTGATACGCATAAAAGCCGGGGCATACTTTGAGAACGTGGAGGTGATAAGGAAAAAAACCAATTTGATGTTGGTCGGAGATGGTATTGGAAAAACTATTGTGAAAGCCGGAAGGAATGTTGTAGATGGGTGGACCACTTTTCAATCTGCCACTGTAGCTGTATTAGGAGAGGGATTCATAGCAAAGGGAATAACGTTTGAGAACTCAGCAGGGCCGAGCAAACACCAAGCCGTGGCCCTGAGAAGCGGTGCGGACCTATCCGCATTCTATAAATGCAGCTTCGTAGGGTACCAAGACACGCTGTATGTGCATTCCCTTCGTCAATTCTATCGTGAATGCGACATTTACGGTACCGTTGACTTCATCTTTGGGAATGCGGCGGTTGTCTTCCAAAACTGCAACCTATACGCACGCAGGCCTAATCAAAACCAGAGCAACATGTTCACTGCCCAAGGGAGAGAGGACCCTAACCAGAACACTGGCATTTCAATCCTCAGCTGCAAGGTCGCAGCAGCTGCGGATTTAGTCCCCTTTAAATCCTCTTTCAAGACCTACTTAGGACGCCCTTGGAAGATGTATTCGAGGACTGTTTATATTAAAACTTACATGGAGGATCTGATTGAGCCTGCTGGCTGGTTGGAATGGAATGCCACTTTCGCATTGGATACACTGTATTATGGTGAGTACATGAATGTGGGTCCGGGTTCCAATACAAGCGCCAGAGTTACATGGCCTGGTTACAGGGTCATCAACTCCTCCACTGAGGCTACTCAGTTCACAGCTGGCCAGTTTATTCAGGGGAATGACTGGTTGAAATCCACTGCCATCCCGTTTTTCCTTAACTTGACCTGA 1752 0.4817 MIEVVTILSIPPSLSPFPIFTMYNLRRRTATLLALVPFFSLVLGLLFSVPHFTNSPKTTKSPEIHLHFSKHLQVAHSICQGTLYPDLCVSTLASFPDLTSKSVPEMISSVLNSTVYDVESSSSNCSDLRKNLRNLDPLEHRALDDCVRLFDDTVEELKATIAVLSNSEMGSQRYHDLQTLLSGAMTNLYTCLDGFAYSQGNVRDKIQERLLEISHQVSNSLAMLKKVSGVKKASKSEVFPEYGKMKHGFPSWVSPKERKLLQGGVNEIRFDLVVAKDGTGNFTTIGEAVAAAPNSSTTRIVIRIKAGAYFENVEVIRKKTNLMLVGDGIGKTIVKAGRNVVDGWTTFQSATVAVLGEGFIAKGITFENSAGPSKHQAVALRSGADLSAFYKCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYARRPNQNQSNMFTAQGREDPNQNTGISILSCKVAAAADLVPFKSSFKTYLGRPWKMYSRTVYIKTYMEDLIEPAGWLEWNATFALDTLYYGEYMNVGPGSNTSARVTWPGYRVINSSTEATQFTAGQFIQGNDWLKSTAIPFFLNLT 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3366 583 Pfam Pectinesterase 271 568 IPR000070 GO:0030599|GO:0042545
Glsi02g3366 583 Pfam Plant invertase/pectin methylesterase inhibitor 76 223 IPR006501 GO:0004857
Glsi02g3366 583 FunFam Pectinesterase 265 582 - -
Glsi02g3366 583 FunFam Pectinesterase 71 228 - -
Glsi02g3366 583 PANTHER PECTINESTERASE 49 572 - -
Glsi02g3366 583 CDD PMEI-like_3 77 229 - -
Glsi02g3366 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 74 229 IPR035513 -
Glsi02g3366 583 SMART PMEI_2 70 223 IPR006501 GO:0004857
Glsi02g3366 583 NCBIfam pectinesterase inhibitor domain 58 227 IPR006501 GO:0004857
Glsi02g3366 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 76 227 IPR035513 -
Glsi02g3366 583 ProSitePatterns Pectinesterase signature 2. 415 424 IPR033131 -
Glsi02g3366 583 Gene3D - 265 582 IPR012334 -
Glsi02g3366 583 SUPERFAMILY Pectin lyase-like 270 580 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3366 Glsi-ChrGlsi02 81295910 81299862 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3366 99 582 Carbohydrate Esterase AT4G02320 55.533 0.0 563