Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3363 ATGGCTTCCAAGCTATGTTCCCTCGCAACAATGGCATTTCTTCTTCTCCTACCATTGTTTGCTTCTCTGGCTTTTGCAGACACTCCTCCCACTAGTTCTGTCTCCCCTGGAACCGTATGCAACTCCACCCCTGACCCTTCTTTTTGTAAGTCTGTGCTGCCTCCCCAAAATGCCAATGTCTACGACTATGGCCGCTTGTCTGTCAGAAGATCCTTATCACAGTCTCGTAAATTCTTGAACCTAGTTGATAACTATCTCCAAAGACCCTCCACCTTGTCTGCCGCAGCCGTCCGGGCACTCGAAGACTGCCGGGTTCTTGGCGACCTCAACTTTGATTTCCTTTCAAATTCCTTTCAAACTGTGAATAAGACAACCTCGTTTCTCCCGAGTTTACAAGCTGACAATATCCAAACCTTGCTCAGTGCCATTTTAACCAACCAGCAAACCTGCTTGGATGGCCTTAAAGACACTGCTTCGGCTTGGAGAGTCAAGAATGGACTTTCTGTCCCGCTTTCTAACGATACCAAGCTGTACAGTGTCTCTTTAGCTCTATTCACAAAGGGGTGGGTTCCCAGTGGCAAAAAGAAAACTAATGCTTTCCAGCCAACCAAGAAACAACTTGGATTCCGAAACGGGCGTCTGCCACTTAAGATGTCAACCAGAACCCGCGTGATCTACGAGTCGGTGAGTCGGAGAAAACTGCTTCAGACAACAGTGGGTGACCAGGTTTCGGTAAGGGACATCGTAACGGTGAGTCAGGACGGAAGTGGAAACTTCACCACCATCAATGACGCGCTTGCCGCTGCTCCAAACAAGTCTTCCTCTAGCGATGGGTACTTCCTGATCTACGTCACCGCGGGTGTTTACGAAGAGAATGTGTCCATTGATAAGAAAAAGACATACTTGATGATGGTGGGAGATGGTATCAACAAGACAATCATTACAGGAAATCGAAGCGTGGTTGATGGGTGGACGACATTCAACTCCGCAACCTTTGCTGTGGTCGGGCAAGGATTCGTTGGGGTGAATATAACATTCCGTAACACTGCTGGGGCAGCTAAGCACCAAGCAGTGGCAGTTCGAAACGGAGCAGATTTGTCTACGTTTTACAGCTGCAGCTTCGAGGGGTACCAAGATACGTTATACGCGCATTCTCTGAGACAGTTCTACAGAGAATGCGATATCTACGGCACTGTAGATTTCATATTTGGAAATGCTGCCGTCGTATTCCAAAACTGCAATCTATATCCCCGTCTTCCTATGAGTGGGCAATTCAACGCCATCACTGCTCAAGGTCGAACTGATCCCAATCAAAATACCGGCATTTCTATCCATAACTGCACTATTAAAGCAGCTGACGATTTGGCTTCCAGCGGAACTTCGGTCGAAACGTACCTGGGGAGGCCGTGGAAGGAGTACTCGAGGACGGTTTATATGCAGAGCTTCATGGATAGTTTGATAGATTCTGCCGGTTGGCAACAATGGGATGGTAATTTTGCGTTAAGCACACTGTATTATGCCGAGTTTAATAACAGTGGGCCCGGCTCCAGCACGGCCAACAGAGTGACGTGGCCCGGTTACCACGTGATTAACGCCACGGATGCAGCTAATTTCACGGTCTCGAACTTCTTGCTAGGGGATGACTGGTTGCCACTCACCGGAGTCACCTACGCCAGCACCTTAATCTAG 1689 0.4855 MASKLCSLATMAFLLLLPLFASLAFADTPPTSSVSPGTVCNSTPDPSFCKSVLPPQNANVYDYGRLSVRRSLSQSRKFLNLVDNYLQRPSTLSAAAVRALEDCRVLGDLNFDFLSNSFQTVNKTTSFLPSLQADNIQTLLSAILTNQQTCLDGLKDTASAWRVKNGLSVPLSNDTKLYSVSLALFTKGWVPSGKKKTNAFQPTKKQLGFRNGRLPLKMSTRTRVIYESVSRRKLLQTTVGDQVSVRDIVTVSQDGSGNFTTINDALAAAPNKSSSSDGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFNSATFAVVGQGFVGVNITFRNTAGAAKHQAVAVRNGADLSTFYSCSFEGYQDTLYAHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGISIHNCTIKAADDLASSGTSVETYLGRPWKEYSRTVYMQSFMDSLIDSAGWQQWDGNFALSTLYYAEFNNSGPGSSTANRVTWPGYHVINATDAANFTVSNFLLGDDWLPLTGVTYASTLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3363 562 FunFam Pectinesterase 242 561 - -
Glsi02g3363 562 SUPERFAMILY Pectin lyase-like 247 559 IPR011050 -
Glsi02g3363 562 SMART PMEI_2 31 184 IPR006501 GO:0004857
Glsi02g3363 562 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 187 IPR035513 -
Glsi02g3363 562 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Glsi02g3363 562 Pfam Pectinesterase 249 547 IPR000070 GO:0030599|GO:0042545
Glsi02g3363 562 Pfam Plant invertase/pectin methylesterase inhibitor 38 184 IPR006501 GO:0004857
Glsi02g3363 562 NCBIfam pectinesterase inhibitor domain 7 186 IPR006501 GO:0004857
Glsi02g3363 562 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 38 187 IPR035513 -
Glsi02g3363 562 Gene3D - 243 561 IPR012334 -
Glsi02g3363 562 CDD PMEI-like_3 38 189 - -
Glsi02g3363 562 FunFam Pectinesterase 37 187 - -
Glsi02g3363 562 PANTHER PECTINESTERASE 23 551 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3363 Glsi-ChrGlsi02 81278002 81279772 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3363 14 562 Carbohydrate Esterase AT4G02330 64.550 0.0 735