Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3339 ATGAAGTCAACAACAGTAATAGGGTTTAAAATACGTCAAATTCCTTTTAGCAATGGAGTCGTAGACCAGACCATCACGGGGGTTTTGTTTTGCTGGGAGACTGTCCAGTGTGAACCGGAGAATAAGATGCGATATTTTCACAGATTCTGGAGAACCGCAGCCCACTCTCGCGAGTATCTCAAAATTAATACTTGCTTTCTGCGCGGAGCGAAGACCAGTGAGCAAGAGAGAAAGAGGGCATCCGGATGGGGAATCACAGGGAACAAGGGTCGCTGCTACGATTTCTGGGTGGACTTCAGCGAGTGCATGTCTCTCTGTCGAGAGCCCAAGGACTGCGCACTCCTCCGTGAAGACTACCTCGAGTGTCTCCACCATGCTAAAGAGTTCCAACGAAGAAATCGGATTTACAAGGAGGAGGAGCGTAAACTAAGACCTGCTGCACGGAAGTCTCAGGAGGATGTTGCTTCTTTTGTATCTCTCATAAAACTTAATCCTAAGTTTGCAAGGCCCCTATTTTGCCATATAGTCAGGCCAATAGTAAACCACAGGCAAGTTGCAAGGTCAGGAAAAATGAGTAGACGTGCAAGCAGAACTGTCTACGTTGGGAATCTGCCGGGTGATATTCGTGAAAGAGAAGTGGAAGATCTGTTTCTCAAGTATGGGCACATAACTCACATTGACTTGAAGGTACCACCAAGGCCCCCTGGTTATGCATTTGTAGAGTTTGAAGATGCACAAGATGCTGAAGATGCAATTCGTGGTCGCGATGGCTACGACTTTGATGGGCATCGGTTACGGGTAGAGCCTGCACACGGCGGACGTGGTCATTCATCATCAAGAGATCGACATAGTAGTCACAGCAATGGTCGAGGTGGACGTGGGGTATCCAGGCGTTCTGAATATCGTGTTCTAGTCACTGGGTTGCCCTCTTCTGCTTCCTGGCAGGATCTTAAAGATCACATGAGAAAGGCAGGGGACGTTTGTTTCTCCCAAGTTTTTCATGATGGAAGAGGTACTACTGGGATTGTGGATTACACAAACTATGATGACATGAAATATGCTATCAAGAAGCTTGATGACTCTGAGTTCCGGAACGCATTTTCCAGGGGTTATGTTCGTGTGAGGGAATATGATTCAAGACGGGACTCCTCTAGAAGTCCTAGTCGTGGACGATCTTATTCTAGGGGAAGAAGCTATAGCCGCAGTCGTAGCCGGAGTTACAGTCGAGGGCAGAGCCAGAGCAAATCTCCAAAGGGTAAATCTTCACATCGTTCACCTGCTAGATCTCCTTCAAGATCTGTTTCTCACTCTCGTTCTCCCTCTAAGTCAAGGCCCCGTTCTTTATCAGGATATGGATACTTGCAGCAAACTGGGAATTGGAAATTAGGAACTTGGTGGGATTTGGTTCAATTGCCTGCAACTCAATTTGTTGTGGAGATTGGGAACCAAGGAGATCATGGATTGCTATTTTAG 1473 0.4698 MKSTTVIGFKIRQIPFSNGVVDQTITGVLFCWETVQCEPENKMRYFHRFWRTAAHSREYLKINTCFLRGAKTSEQERKRASGWGITGNKGRCYDFWVDFSECMSLCREPKDCALLREDYLECLHHAKEFQRRNRIYKEEERKLRPAARKSQEDVASFVSLIKLNPKFARPLFCHIVRPIVNHRQVARSGKMSRRASRTVYVGNLPGDIREREVEDLFLKYGHITHIDLKVPPRPPGYAFVEFEDAQDAEDAIRGRDGYDFDGHRLRVEPAHGGRGHSSSRDRHSSHSNGRGGRGVSRRSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSQVFHDGRGTTGIVDYTNYDDMKYAIKKLDDSEFRNAFSRGYVRVREYDSRRDSSRSPSRGRSYSRGRSYSRSRSRSYSRGQSQSKSPKGKSSHRSPARSPSRSVSHSRSPSKSRPRSLSGYGYLQQTGNWKLGTWWDLVQLPATQFVVEIGNQGDHGLLF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3339 490 Gene3D - 181 300 IPR012677 -
Glsi02g3339 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 266 IPR000504 GO:0003723
Glsi02g3339 490 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 303 365 IPR000504 GO:0003723
Glsi02g3339 490 MobiDBLite consensus disorder prediction 263 297 - -
Glsi02g3339 490 FunFam serine/arginine-rich splicing factor SR34A-like 301 378 - -
Glsi02g3339 490 MobiDBLite consensus disorder prediction 263 300 - -
Glsi02g3339 490 MobiDBLite consensus disorder prediction 389 450 - -
Glsi02g3339 490 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 89 130 - -
Glsi02g3339 490 SMART rrm1_1 198 268 IPR000504 GO:0003723
Glsi02g3339 490 SMART rrm1_1 302 375 IPR000504 GO:0003723
Glsi02g3339 490 Gene3D - 301 378 IPR012677 -
Glsi02g3339 490 SUPERFAMILY RNA-binding domain, RBD 196 366 IPR035979 GO:0003676
Glsi02g3339 490 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 187 446 - -
Glsi02g3339 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 272 IPR000504 GO:0003723
Glsi02g3339 490 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 301 379 IPR000504 GO:0003723
Glsi02g3339 490 CDD RRM1_SF2_plant_like 198 268 - -
Glsi02g3339 490 MobiDBLite consensus disorder prediction 376 450 - -
Glsi02g3339 490 FunFam ASF/SF2-like pre-mRNA splicing factor SRP31 191 300 - -
Glsi02g3339 490 CDD RRM2_SF2_plant_like 301 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3339 Glsi-ChrGlsi02 81158702 81167514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3339 170 363 Eukaryotic Initiation Factors Gene Family AT4G34110 24.876 1.17e-08 55.5