Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3332 ATGGTTGAAACCAGACGTAGCTCCTCTTCTTCCAAGCGCTCTCTCTCTTCACCCTCTCCTTCCAACGCCAAACGATCGAAGGTGTCCGAGGATACGTCATCAACCAGTCTCCCATCAGGGGAAATTCTTAGTCAGGTCAACGAATCTGGTAATGAATCTCGAGAACGGGAGCTACGCCCATCTGATCTACCAGATACCGATACGTTGAAGGCTGTGGACATGAGTGATGAGATGTTACCTGAGAAATCTCCTGTCGTGCCCGTCGAAGGCGAGGCTCTGGTGTCACCGCTGTCTTTAGGCGAAACTGCAGTGGAAGCGGAGAAATCAAAGGTAGTTAACGCGGCTGGGCGGTCAAAGAAACGCCCTACAAAGTCCACAAAATCGGGCCCCAAGGCTGTATGGGGAAAGCTTCTTTCTCAGTGCTCTCAGAATCCTCACTTATCGCTGTGTGGACTCTTCACTGTTGGTCAAGGACGTCATTGTGATTTATGGCTTAAAGATCCAACTGTTAGTAATGTTTTGTGCAAATTGAGGCACATAGAGCGGGGAGGTTCATCTGTTGCATTGCTGGAAATCATAGGGGGTAAAGGTACTGTCCAAGTTAATGGCAGGAATTACCAAAAAAATTCCCGTGTTATTTTAAGTGGAGGTGATGAGGTGGTCTTCAGTTCTTCTGGCAAGCATGCATATATTTTTCAGCAGCTCACTAATAATAATATAGCCACCACGGGGGTACCTTCTTCCATAAGTATTTTAGAAGCTCAGAGTGCACCAATTAAGGGAATGCATATTGAAGCTAGATCTGGAGATTCTTCTGCTGTTGCTGGAGCATCGATATTAGCATCTTTATCTAACCTTCATAAAGATTTATCTCTCCTTCCACCTCCTGCTAAAACTGGTGAGAATGTCCAACAGAATGCTGAGGGTGCGTCCCTACCTTCTGGCCAAGGAGACGATACTCAAGACAATGGAATGAAGGATACCACCAATATTGATCCAGCTGGAGTTGTTTCAGCTGAGAAAACTGTTCATGCATCCTCTACCACTGCCAATGAAAATCCTAGCCTTGACTGCATGGAAATGGATGCTGGTGTGGATGCTGATGTTGGGAAAGTAACTAGCACTACTGGTGCTACCTATGAATTAAGGCCATTGTTGCGCATGCTTGCTGGTTCTTGTACTGAATTTGATTTAAGTGGTAGCTTTTCCAAAATATTGGAAGAGCGGAGGGATTTGAGAGAACTCCTTAAGGATGTTGATCCTCCAACATTATTGGCATCGACCAGGCGGCAAGCATTTAAGGAGAGTTTACAACAAGGAATTCTCAATCCCGATGATATTGATGTCTCATTTGAAAGTTTCCCATATTTTCTAAGTGATACAACAAAGGATGTTTTGATCGCTTCTACATACATTCATTTGAAGTGCAATGGTTTTGCAAAATATGCTTCAGACCTCCCTTCAGTGTGTCCACGGATATTGTTATCTGGTCCTGCAGGTTCGGAGATATATCAGGAAACTTTGTCCAAGGCGCTTGCTAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCATTGCCTGGTGGAACACCGCCAAAAGACACTGATTCTGCTAAAGAAAGTTCTAGGCCCGAAAGAACATCTGTGTTTTCAAAACGAAGTGCCCAGACTGCCACATTACAGCATAAGAAACCAACTTCTAGTGTTGATGCTGAAATTATAGGTGGATCCACGTTAAGTTCTCATGCTACAATGAAGCAAGAGGTATCTACTGCATCATCAAAAGGAACTACTCTAAAAACGGGTGACCGCGTAAAATTTGTTGGTAACATTCCTTCAGCTGGTTTATCGCTACAAAATCATCCTTCTAGGGGACCAAGCTATGGATCCCGGGGAAAAGTTCTCCTTGCTTTTGAAGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGTCTTTGCGAAGATGATCGTGGTTTCTTCTGTTCTGCTAATCATTTACTACGAGTAGATAGTTCTGGAGGGGAGGACATTGACAAGCTTGCAGTTAATGAAATTTTTGAGGTTGCCTCCAATCAGAGTAAAACTGGTGCACTAGTGTTGTTCGTGAAAGACATAGAGAAGACAATGGTTGGAAACTCTGAAGTTTTGAAGAGTAAACTTGACAGCTTGCAGCAGAATGTTGTTGTAATTGGCTCACATACCCTGCTGGACAATCGCAAGGAGAAGATACAGCCTGGTGGCCTTCTGTTTACAAAGTTTGGGAGTAATCAGACTGCTCTTCTTGATCTTGCTTTTCCGGATAACTTTAGTAGACTTCATGATAGGAGCAAAGAAACCCCCAAAGCAATGAAGCAACTCAGTCGTCTTTTTCCCAACAAAGTGACAATACAGCTGCCTCAGGATGAGGCTTTGCTTTCTGATTGGAAACAGCAATTAGAACGTGATGTTGAAACTTTGAAAGCTCAGTCAAATATTGTCAGCATTCGATCAGTTCTCAACAGGATTGGATTGGATTGCCCTGACCTTGAGACTCTTTCCATTAAAGATCAAGCCCTAACGACTGAAAGTGTGGAAAAAATCATTGGCTGGGCTTTAAGTTATCATTTTATGCATTCATCTGAAGATTCAATCAAAGACTCTAAGCTTGTGATATCTACTGACAGCATTAAGTATGGGCTGAACATTCTACAGGGCATTCTGAGTGAAAGCAAGAACTTAAAGAAATCGCTGAAGGATGTGGTTACCGAGAATGAATTTGAGAAAAAACTTCTTGCTGATGTTATTCCACCAAGTGATATTGGGGTCACATTTGATGATATTGGAGCCTTAGAAAATGTGAAGGACACCTTGAAGGAGCTGGTCATGCTTCCACTTCAGAGGCCTGAATTGTTTATTAAAGGACAGTTAACTAAGCCTTGCAAGGGAATATTGCTCTTTGGGCCCCCTGGTACTGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCCAATTTCATCAACATTTCGATGTCAAGCATCACTTCAAAGTGGTTTGGCGAAGGAGAGAAATACGTCAAAGCAGTCTTTTCTCTAGCAAGCAAAATTGCTCCAAGTGTTATCTTCGTTGATGAGGTTGATAGCATGTTAGGAAGACGTGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTCAATTGGGATGGTCTGCGCACAAAAGATAAAGAGCGTATACTTGTTCTTGCTGCTACAAATAGGCCCTTTGACCTTGATGAAGCTGTTATTAGGAGGCTTCCCCGAAGATTGATGGTTAATTTGCCAGATGCTCCTAACAGAGAAAAAATTCTGAGAGTCATTTTAGCAAAAGAAGATTTGGCACCTGATGTTGAGTTGGAAGCAGTAGCAAATATGACTGACGGATATTCAGGAAGTGACTTAAAGAATTTATGTGTCACAGCTGCTCACTGTCCAATAAGAGAAATCTTGGAGAAGGAAAAGAAGGAGAGAAGTTTGGCATTGTCTGAGAGTAGACCTTTACCTGTATTATGTAGCAGTGGTGACATTCGACCCTTAAAGATGGATGATTTTAAATATGCACATGAGCAGGTATGTGCAAGTGTGTCATCGGAGTCAACAAATATGAATGAGCTACTCCAATGGAATGACCTTTATGGAGAAGGTGGATCGAGGAAAATGAGATCTTTGAGCTATTTCATACCCAGGGAGAGGGCATCAACGCCAGATCCAGGCGGTCATAGGCCATCTCCTCCATCACGTTATATGGAAATTGACAAAGTTCAGGAAGAAACCAAGAGCCGCACAGATCGCAAACCACCCGGAGTGGGACCTGAAAGGGGAAGAGGTAGGGAGGATGGTGCTGGTGGGCGCCAAGCAAAAGGAATTGGGCGTTGCCTCGATGATGGCAGTAATGAGGGAGCTGGTGGAGGCCGAGGCAAAGGTGGCTCGGGCGTAAGGGCCGGTGGAAACAGAGTTAATTCTTGGATGGCGGAAGCCTTCGGTAAACCACAAAAGCAAGTTGATTCCTTGGAAGCGTAA 4098 0.4358 MVETRRSSSSSKRSLSSPSPSNAKRSKVSEDTSSTSLPSGEILSQVNESGNESRERELRPSDLPDTDTLKAVDMSDEMLPEKSPVVPVEGEALVSPLSLGETAVEAEKSKVVNAAGRSKKRPTKSTKSGPKAVWGKLLSQCSQNPHLSLCGLFTVGQGRHCDLWLKDPTVSNVLCKLRHIERGGSSVALLEIIGGKGTVQVNGRNYQKNSRVILSGGDEVVFSSSGKHAYIFQQLTNNNIATTGVPSSISILEAQSAPIKGMHIEARSGDSSAVAGASILASLSNLHKDLSLLPPPAKTGENVQQNAEGASLPSGQGDDTQDNGMKDTTNIDPAGVVSAEKTVHASSTTANENPSLDCMEMDAGVDADVGKVTSTTGATYELRPLLRMLAGSCTEFDLSGSFSKILEERRDLRELLKDVDPPTLLASTRRQAFKESLQQGILNPDDIDVSFESFPYFLSDTTKDVLIASTYIHLKCNGFAKYASDLPSVCPRILLSGPAGSEIYQETLSKALAKHFGARLLIVDSLSLPGGTPPKDTDSAKESSRPERTSVFSKRSAQTATLQHKKPTSSVDAEIIGGSTLSSHATMKQEVSTASSKGTTLKTGDRVKFVGNIPSAGLSLQNHPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDSSGGEDIDKLAVNEIFEVASNQSKTGALVLFVKDIEKTMVGNSEVLKSKLDSLQQNVVVIGSHTLLDNRKEKIQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKAMKQLSRLFPNKVTIQLPQDEALLSDWKQQLERDVETLKAQSNIVSIRSVLNRIGLDCPDLETLSIKDQALTTESVEKIIGWALSYHFMHSSEDSIKDSKLVISTDSIKYGLNILQGILSESKNLKKSLKDVVTENEFEKKLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFIKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNREKILRVILAKEDLAPDVELEAVANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALSESRPLPVLCSSGDIRPLKMDDFKYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFIPRERASTPDPGGHRPSPPSRYMEIDKVQEETKSRTDRKPPGVGPERGRGREDGAGGRQAKGIGRCLDDGSNEGAGGGRGKGGSGVRAGGNRVNSWMAEAFGKPQKQVDSLEA 1365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 529 573 - -
Glsi02g3332 1365 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 948 1227 IPR027417 -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 1 84 - -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 1 49 - -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 111 131 - -
Glsi02g3332 1365 Gene3D - 133 242 - -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 50 77 - -
Glsi02g3332 1365 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 947 1123 - -
Glsi02g3332 1365 Pfam ATPase family associated with various cellular activities (AAA) 989 1118 IPR003959 GO:0005524|GO:0016887
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 292 332 - -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 298 328 - -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 550 573 - -
Glsi02g3332 1365 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 431 1252 - -
Glsi02g3332 1365 Gene3D - 947 1227 IPR027417 -
Glsi02g3332 1365 Gene3D - 1121 1215 - -
Glsi02g3332 1365 CDD RecA-like_ATAD1 952 1118 - -
Glsi02g3332 1365 SMART AAA_5 985 1122 IPR003593 GO:0016887
Glsi02g3332 1365 Coils Coil 822 842 - -
Glsi02g3332 1365 ProSitePatterns AAA-protein family signature. 1092 1111 IPR003960 GO:0005524|GO:0016887
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 1272 1310 - -
Glsi02g3332 1365 Pfam AAA+ lid domain 1142 1178 IPR041569 -
Glsi02g3332 1365 MobiDBLite consensus disorder prediction 1253 1343 - -
Glsi02g3332 1365 SUPERFAMILY SMAD/FHA domain 151 225 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3332 Glsi-ChrGlsi02 81114549 81129016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3332 948 1196 Calmodulin-binding Proteins AT3G56690 39.062 2.98e-41 163