Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3313 ATGAATGGATTTTATGAATTAGATCCAAATGCTGAGATTATTGCTTTATCACCAACCACATTGATGGCAACAAATAGATTCGTGTGTGAGATCTGCAACAAAGGGTTTCAGAGAGACCAAAACCTTCAGTTGCACCGCAGAGGTCACAATCTTCCATGGAAACTGAGACAAAGACCGAGCACAGCTGAGGTCAAGAAAAGGGTGTATGTGTGCCCTGAGCCATCATGCGTCCACCATAACCCAGCTCGTGCATTGGGAGACCTCACTGGCATCAAGAAGCATTATAGCAGGAAGCATGGTGAGAAGAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCAGTTCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGTACCAGGGAATACAAATGCGACTGTGGAACCATATTTTCCAGGAGAGATAGTTTTATCACCCACAGAGCATTTTGCGATGCATTAACTGAAGAAAACAACCGAGTGAACCAGGGATTAACCAGCGGCATGCAGCCAAACTTGCAAAATCAAATACCAGATCTTATGTCTACAATGCCTCTAAGCACTACTTCCAACACAGCATCCGAATTCAGCAACTACGACCCCAAGAACCCTCTCAAATCCCTCTCCCAAGAACTTGTTCCAATGCCATTCAAGCCCATGAGCATGGGCGGGGGCATGTTCTCCACCACTTCAGGAACACTTTTTGGTGGCCCAAAGACCATCTCTCCCTCTTCTTCTAGCCTTCAGCTCAGTTCCAACACCTCCTCCGGCTTCAATTACTTCCAAGACACCAAAAATGGAGCACTGATTTCTGGTTCAGCTCACATGTCCGCAACAGCTTTACTTCAGAAAGCAGCCCAAATGGGTGCTACTGCAAGCAATAGCATTAACTCTCCCATGATGCAGAAAAGCTTCGTTAGTGGCATGGCTGGTCCTGACCACCACGTCTCTTCCATCAAACCACCATTTTCTGGTTATGACCACTTCCATCCGCAGCCTGATCAATCTAGCATGGCTGGGATTAGTGGTTGTGGAGCATTCACCAACCAAATATTTCAGAAATGCCCACAAGAAATGTCACAACTATTTGATACTAATACTGCTGGATCTACAATCAATGATATGGGTATGTTCAGCCATATGTTCATGGGCGGTGATCAAAACCCAGGATTGATGAAGAATGCGGAACAAGAGACTAGCACTAGTTCGAGCTTGATCCATGGCAGAGATGTAGGAGAAGGGAATCCAATGAGGCCATCAAGGTTTGGAGGGAGTGACATGACAACGGTTCACGACTTCTTGGGTATTGGGGGTTCAACTTCTGGGGCAGCAAATTTGCATGAACCACAGCAGCATCAGCATCAAAGGTTGGAGTTAGAAGCAATAAGCCACCAGAGGTTACCAGTCATGAATGACCTTCATCACCATCTTCCCCATGGGGATTCACCTATGGATAAAAACCCATTCGGGATGTTTGAGAGCTGA 1488 0.4597 MNGFYELDPNAEIIALSPTTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRPSTAEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHQKTCGTREYKCDCGTIFSRRDSFITHRAFCDALTEENNRVNQGLTSGMQPNLQNQIPDLMSTMPLSTTSNTASEFSNYDPKNPLKSLSQELVPMPFKPMSMGGGMFSTTSGTLFGGPKTISPSSSSLQLSSNTSSGFNYFQDTKNGALISGSAHMSATALLQKAAQMGATASNSINSPMMQKSFVSGMAGPDHHVSSIKPPFSGYDHFHPQPDQSSMAGISGCGAFTNQIFQKCPQEMSQLFDTNTAGSTINDMGMFSHMFMGGDQNPGLMKNAEQETSTSSSLIHGRDVGEGNPMRPSRFGGSDMTTVHDFLGIGGSTSGAANLHEPQQHQHQRLELEAISHQRLPVMNDLHHHLPHGDSPMDKNPFGMFES 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3313 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 451 IPR031140 -
Glsi02g3313 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 49 IPR013087 -
Glsi02g3313 495 MobiDBLite consensus disorder prediction 394 416 - -
Glsi02g3313 495 FunFam protein indeterminate-domain 5, chloroplastic-like 82 161 - -
Glsi02g3313 495 SUPERFAMILY beta-beta-alpha zinc fingers 26 125 IPR036236 -
Glsi02g3313 495 MobiDBLite consensus disorder prediction 394 409 - -
Glsi02g3313 495 SMART c2h2final6 27 49 IPR013087 -
Glsi02g3313 495 SMART c2h2final6 69 99 IPR013087 -
Glsi02g3313 495 SMART c2h2final6 104 124 IPR013087 -
Glsi02g3313 495 Pfam Zinc finger, C2H2 type 27 49 IPR013087 -
Glsi02g3313 495 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Glsi02g3313 495 Gene3D Classic Zinc Finger 83 162 - -
Glsi02g3313 495 FunFam protein indeterminate-domain 12-like 6 75 - -
Glsi02g3313 495 Gene3D Classic Zinc Finger 8 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3313 Glsi-ChrGlsi02 81012051 81013620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3313 8 294 IDZ Gene Family AT3G50700 55.591 2.09e-104 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3313 zf-C2H2 0.005 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3313 02 81012051 81013620 Glsi02g3313 02 81012051 81013620 ECH