Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3309 ATGGTGGAGAGGAGGAAGCCTCTGGTACTCGCTTCCACCAAATCTCTCATCAATTCCGTACTCAGCTCGTCGCGACTTGGGGAAGCAAACCCTGGAGCCGGAGACAAGCTCTTTGATGATGAATCTCCCAGGAACTTGCTGTTACCTGTGGGGATTCTTCGATTCTCGGAGGACGGAAATCGGAAACCAGAACCCCAATTCGACGCTCTTGACGAATCTGCATTAGTCGGCCTCTCAACTTTGCTTTTGAGAAGGCTTGCTATTACTTCAGGTTCACTGGTGCTTGTCAAGAATGCTGAGATGAACTTGCAGAGAATTGCACGGGCCATTGCTCTAGATCCTCCAGGCAACCATGAGTGCACATCTGATATTAAATTGCCCTCTCCTCAATCTTTTCGTATAATGCTTTTATTTCCTTCTTGTGTTTTCCCTCATAGTGACACTGACACATTAGATCGTGAAGTTGCTTATGTATCTCCTCTCTTAGCTTTTAACCTCAATTTGCACATAACATGCTTAAAATCTATTCTACACCAAGGACAAGAGGTTTTAGCATCTTATTTCAAACCTGAAGTGGATGAGGAGGCTAGTGCAAAATGCTTTGAGGCTTCTGTCATTAACATAGAACTGGTACCTTTTGATCAAGCTCCTAGATATGCATCACATTTAAGGGTTGCGTTTGTGAGGATACCAGCATGCGGTACCCTTGAATCTATTAGAGGAAGTTCACCTGTTGAATCAGAAGAACGCCAAGACATGATTGATTTAGCATTACAAAAATACTTTAAAGTGGATAGATATTTGACAAGAGGAGATATTTTTGGCATCAGTATAAATTGGAACTGCAATTCCATTATTTGCATTCCTTGCAACCAAAAATCACAAAAGAAAAATGACAATCGTATCTACTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTTTGTGTCAATCGAACTTCAACTGCTCTGGTGCTTGGAGGGAGTTCCCCTTCTACTCTTCCACCGGATTTGTTAATTGCTGGACCAGGAGGTCCTGTACCTTTGCAAGGGGACACAGTAAAAATTTTGGCTTCAATACTTACACCACCTTTCTGTCCATCAGCACTTTCTTCAAAGTTCAGAGTTTCCGTTCTATTGTATGGCTTGGCAGGTTGTGGGAAGAGGACTGTTGTTAGATATGTAGCTCGTCGACTGGGCCTGCATGTGGTGGAATATAACTGTCATGATTTAATCGTGTCAGAAAGACATACATCTTTTGCACTAGCTCAAGCTTTCAAGACTGCTCAAAGGTACTCACCAACAATACTTCTTCTCCGTCATTTTGATGTTTTTCGAGATATGCAAGCTCTTGAGGGTTCGTTAAATGATCAAAAAGGCAATATATCTGAAGTTGCATCTGTTATAAGGAAATTCACTGAGCCAATTAGTGAAGATGGTGATATCTACTCCTATGGGAAACCAAGTGATGAATTTGTTGAAAAAAGTGCTGAAAAGACAAGTGGACATCAGATCCTGTTGATTGCTGCTGCTGCCAGTTCTGAAGGTCTGCCTTCAACTATTAGACGCTGCTTCAGCCATGAGATAAATATGGGGCCTTTGACTGAAGAGCAAAGGGCTGAAATGCTATCCCAGTCACTGCAAAGTGTCTCTGAACTCCTCTCTAATACTGATTCTGAGAGTTCTGTAAAAGAAATAGTTGGGCAGACATCTGGTTTCATGCCCAGGGACATGCGTGCTTTGATTGCTGATGTCGGTGCCAACTTGTTTCACAGTAGAACTGGTGCAGTAGACGAAGTTAAGCCTGAGGATGTAGATGGTTCTCTTAGTTCCAAGGCGATGCAGGACAGCAACCAATGGAAAATTTCAGCTCATGTTCCAGGGAAAGAAGACTTGACAAAAGCTTTGGAACGATCAAAGAAAAGAAATGCAGCAGCACTGGGTACTCCAAAGGTTCCAAATGTGAAATGGGAAGATGTTGGTGGGCTTGAAGATGTGAAAAAATCAATCCTGGATACTGTTCAGTTGCCTCTCCTGCATAAGGATTTGTTTTCATCTGGACTACGCAAGCGCTCTGGTGTTCTTCTGTATGGACCCCCTGGAACTGGCAAAACATTATTAGCCAAAGCTGTTGCCACCGAATGTTCCTTAAATTTTCTTAGCGTAAAAGGGCCTGAACTGATCAACATGTACATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTCCAGAAGGCCAGATCATCACGTCCATGTGTTATCTTCTTTGATGAGCTTGATTCTCTTGCTCCAGCTCGGGGTGCTTCAGGGGATTCTGGGGGTGTTATGGACAGAGTGGTTTCTCAGATGCTTGCAGAGATTGATGGCCTGAATGATTCTACGCAGGATTTGTTTATCATAGGTGCAAGTAATAGGCCAGACTTGATTGACCCCGCACTTTTACGCCCTGGCCGATTCGATAAACTGCTATATGTTGGAGTTAACTCTAATGCATCTTACAGGCAGCGGGTCCTTAAAGCACTTACCCGGAAGTTTAAATTGCACGAAGATGTTTCACTTTACTCAATAGCAACAAAGTGTCCACCAAACTTTACTGGTGCAGACATGTATGCCTTGTGTGCAGACGCTTGGTTTCAGGCTGCAAAGCGTAAGGTTTTGAGTGCAGATCCAGACTCTTCCTGCAAAGATGATGAAGCAGATTCTGTTGTTGTTGAATACAGTGATTTTGTCCAGGTCTTAGGGGAGCTGATGCCTTCCCTTTCCATGGCTGAGCTTAAAAAATATGAGCAACTGAGAGATCAGTTTGAAGGCACATCAAAATGA 2829 0.4309 MVERRKPLVLASTKSLINSVLSSSRLGEANPGAGDKLFDDESPRNLLLPVGILRFSEDGNRKPEPQFDALDESALVGLSTLLLRRLAITSGSLVLVKNAEMNLQRIARAIALDPPGNHECTSDIKLPSPQSFRIMLLFPSCVFPHSDTDTLDREVAYVSPLLAFNLNLHITCLKSILHQGQEVLASYFKPEVDEEASAKCFEASVINIELVPFDQAPRYASHLRVAFVRIPACGTLESIRGSSPVESEERQDMIDLALQKYFKVDRYLTRGDIFGISINWNCNSIICIPCNQKSQKKNDNRIYFKVIAMEPSDEPVLCVNRTSTALVLGGSSPSTLPPDLLIAGPGGPVPLQGDTVKILASILTPPFCPSALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLIVSERHTSFALAQAFKTAQRYSPTILLLRHFDVFRDMQALEGSLNDQKGNISEVASVIRKFTEPISEDGDIYSYGKPSDEFVEKSAEKTSGHQILLIAAAASSEGLPSTIRRCFSHEINMGPLTEEQRAEMLSQSLQSVSELLSNTDSESSVKEIVGQTSGFMPRDMRALIADVGANLFHSRTGAVDEVKPEDVDGSLSSKAMQDSNQWKISAHVPGKEDLTKALERSKKRNAAALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFSSGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSSRPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLNDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSNASYRQRVLKALTRKFKLHEDVSLYSIATKCPPNFTGADMYALCADAWFQAAKRKVLSADPDSSCKDDEADSVVVEYSDFVQVLGELMPSLSMAELKKYEQLRDQFEGTSK 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3309 942 ProSitePatterns AAA-protein family signature. 799 817 IPR003960 GO:0005524|GO:0016887
Glsi02g3309 942 Pfam ATPase family associated with various cellular activities (AAA) 696 828 IPR003959 GO:0005524|GO:0016887
Glsi02g3309 942 Pfam ATPase family associated with various cellular activities (AAA) 380 533 IPR003959 GO:0005524|GO:0016887
Glsi02g3309 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 655 936 IPR027417 -
Glsi02g3309 942 Gene3D - 830 916 - -
Glsi02g3309 942 FunFam Peroxisome biogenesis protein 6 830 916 - -
Glsi02g3309 942 Gene3D - 654 931 IPR027417 -
Glsi02g3309 942 PANTHER AAA-FAMILY ATPASE 74 939 - -
Glsi02g3309 942 FunFam Peroxisomal biogenesis factor 6 654 844 - -
Glsi02g3309 942 Gene3D - 349 557 IPR027417 -
Glsi02g3309 942 SMART AAA_5 376 537 IPR003593 GO:0016887
Glsi02g3309 942 SMART AAA_5 692 831 IPR003593 GO:0016887
Glsi02g3309 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 616 IPR027417 -
Glsi02g3309 942 FunFam Peroxisome biogenesis protein 6 349 534 - -
Glsi02g3309 942 CDD RecA-like_PEX6_r2 668 827 IPR047533 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3309 Glsi-ChrGlsi02 80962736 80974554 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3309 662 901 Calmodulin-binding Proteins AT3G56690 38.525 9.04e-40 157