Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3308 ATGGATTTGTACGGTCGCAACCCAGCGAGGAATGGGTCACAACCGGGTAATCAATCCGAATGGCGCCCAGCAGGCGGAGAAACTGGCCTTGAAGAATCGATGTGGCATTTAACACTCAGTAGCAGCGAATCATACCCAGAGCGACCCGGCGTACCCAATTGTGCGTATTACATGCGAACGGGGTTCTGTGGATATGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCAGCAGCTGTCAGAGCTACAGGGGAGTACCCAGAGCGGGTGGGGGAACCTCCGTGTCAGTATTATTTAAAAACTGGAACCTGCAAATTCGGTGCATCTTGCAAATTCCACCATCCAAAACATGGAGGTGGATCTTTAAGTCAAGCTCCACTAAATATTTATGGATACCCATTACGGCCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACAGTTCCTCTGACTGAACAATATGGGGGGGCATCCACTAGCTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTCTAAGTCCTGTTTTATCTCCTGGAGGTCAATCTGCTGTTGGGGCTACTTCTTTGTATGGAGTGACACAGTTGCCTTCATCATCATCAGCTTTTGCTAGACCTTATACTCCTCTGCCCTCTACTACAGACCTTTCAGGCAGTAGCCAGAACGAGCAAGTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATATGGATTAGCTTGTCGATATCATCATCCTAGAGACCGGACTGTGACACGGCCACTTCTCAGCCCTCTCGGTCTTCCATTACGTCCGGGGGTACAACCTTGTGTCTTTTACTTGCAAAATGGGCACTGCAAGTTTGGCTCCACGTGCAAATTTGACCATCCTTTGGGGCCTATGAGATACAGTCCGTCAGCATCTTCTCTCATTGATATGCCAGTTACTCCATACCCTGTTGGATCTTTGCTGTCAACTCTGGCTCCTTCAACAACTTCTTCAGAGCTTCGGCCTGAACTGTTATCAGGGTCCAAAATGGAATCTTTTTCTACCAGAATGCCTTCCTCTGGAAACAGCACAAGCGGTTCCGTCAGTTTAATTTTCTCACAAGGTGGATCCGTCTCTCTTTCTGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTTTAAGCAGTAGCAGAAGTACTAGACAAAGTGGTGACATACGGTGA 1416 0.4809 MDLYGRNPARNGSQPGNQSEWRPAGGETGLEESMWHLTLSSSESYPERPGVPNCAYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLTEQYGGASTSLRVARPSILPGSYVQGAYGPVLLSPGVVPFPGWSPYTAPLSPVLSPGGQSAVGATSLYGVTQLPSSSSAFARPYTPLPSTTDLSGSSQNEQVFPERPGEPECQYYLRTGDCKYGLACRYHHPRDRTVTRPLLSPLGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGPMRYSPSASSLIDMPVTPYPVGSLLSTLAPSTTSSELRPELLSGSKMESFSTRMPSSGNSTSGSVSLIFSQGGSVSLSDVQLSSQSSAPLSSSRSTRQSGDIR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3308 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Glsi02g3308 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Glsi02g3308 471 MobiDBLite consensus disorder prediction 1 27 - -
Glsi02g3308 471 MobiDBLite consensus disorder prediction 413 433 - -
Glsi02g3308 471 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Glsi02g3308 471 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Glsi02g3308 471 PANTHER PROTEIN PHOSPHATASE RELATED 25 381 - -
Glsi02g3308 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Glsi02g3308 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Glsi02g3308 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Glsi02g3308 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Glsi02g3308 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Glsi02g3308 471 MobiDBLite consensus disorder prediction 448 471 - -
Glsi02g3308 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Glsi02g3308 471 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Glsi02g3308 471 Gene3D - 42 88 - -
Glsi02g3308 471 Gene3D - 295 376 - -
Glsi02g3308 471 Gene3D - 92 177 - -
Glsi02g3308 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Glsi02g3308 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Glsi02g3308 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Glsi02g3308 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
Glsi02g3308 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Glsi02g3308 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Glsi02g3308 471 SUPERFAMILY CCCH zinc finger 300 325 IPR036855 GO:0046872
Glsi02g3308 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Glsi02g3308 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3308 Glsi-ChrGlsi02 80955282 80960076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3308 1 435 C2H2 Transcription Factor Family AT5G18550 50.110 4.80e-136 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi02g3308 zf-CCCH 5.2e-08 CL0537