Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3301 ATGGAAGATTCTGCAACACAAGCAAGAGAGCACTTTGGAATGTTGCAGTATGGGTGCGAGCACTATAAGAGACGATGCAAAATTCGAGCTCCATGCTGTGACCAGATCTTCCCATGTCGCCACTGCCACAACGAGGCCATGAGCTCGCTTAGCAATCCCAAAGATCGTCATGAACTTGTCAGATGCGATGTTATGCTTGTTACATGTTCTGTTTGTGATACTGAGCAGAAGGTTGCCAAGTTGTGTTCCAATTGTGGCGTCAACATGGGAGAATATTATTGCGAGATTTGCAAATTCTATGACGATGATACAAATAAAGGGCAATTCCATTGTGATGAATGTGGGATTTGCAGGGTTGGTGGCCGTGATAACTTCTTTCATTGTCAGAAATGCGGATCTTGCTATGCAGTGAGCTTGCAAAACAATCACTTATGTGTAGAGAACTCAATGAAGAGTTACTGCCCTGTCTGTTATGAGTATCTATTTGATTCAATTAAAGGCACCACAATTATGAGTTGTGGACACACAATGCATATGGAATGCTTTCAAGAGATGGCAACCCAAAATCAGTACCGGTGTCCTATCTGCTCGAAGACAATATTCAATATGTCTGAGAATTGGAGACATTTAGACCAGGAGATTGAAGCTTTTCCCATGCCTGAGGAGTACAAGATAGAGGTCTCAATTCTGTGCAATGATTGTAACACCACCAGCTTAGTGTCCTTTCACATTCTAGGCCTCAAGTGCAGACACTGCAGTTCGTATAACACTCGTAGGATTTCAGCGCCAGAGAATCGATGA 801 0.4307 MEDSATQAREHFGMLQYGCEHYKRRCKIRAPCCDQIFPCRHCHNEAMSSLSNPKDRHELVRCDVMLVTCSVCDTEQKVAKLCSNCGVNMGEYYCEICKFYDDDTNKGQFHCDECGICRVGGRDNFFHCQKCGSCYAVSLQNNHLCVENSMKSYCPVCYEYLFDSIKGTTIMSCGHTMHMECFQEMATQNQYRCPICSKTIFNMSENWRHLDQEIEAFPMPEEYKIEVSILCNDCNTTSLVSFHILGLKCRHCSSYNTRRISAPENR 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3301 266 ProSiteProfiles Zinc finger CHY-type profile. 12 87 IPR008913 GO:0008270
Glsi02g3301 266 ProSiteProfiles Zinc finger CTCHY-type profile. 89 153 IPR017921 -
Glsi02g3301 266 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 12 264 - -
Glsi02g3301 266 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 215 IPR013083 -
Glsi02g3301 266 SMART ring_2 154 196 IPR001841 -
Glsi02g3301 266 ProSiteProfiles Zinc finger RING-type profile. 154 197 IPR001841 -
Glsi02g3301 266 SUPERFAMILY RING/U-box 153 203 - -
Glsi02g3301 266 Pfam CHY zinc finger 19 99 IPR008913 GO:0008270
Glsi02g3301 266 SUPERFAMILY CHY zinc finger-like 16 88 IPR037274 GO:0008270
Glsi02g3301 266 SUPERFAMILY Zinc hairpin stack 90 147 IPR037275 -
Glsi02g3301 266 Gene3D - 224 264 - -
Glsi02g3301 266 Pfam Zinc-ribbon 201 258 IPR039512 -
Glsi02g3301 266 Pfam Ring finger domain 153 196 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3301 Glsi-ChrGlsi02 80907707 80911594 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3301 17 262 C2H2 Transcription Factor Family AT3G18290 42.688 5.38e-53 183