Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3300 ATGAGTGATTCTCCGAAACACCCACATCCTATTCCTTCGGATAAAGATCAAGCACCACATCTAGAGAGACCATGTGACTACTGTGGAGACTCCACGGCTCTGCTCTACTGCCGAGCTGATTCTGCCAAGCTTTGTTTCTCTTGTGATCGTGAAGTTCACTCTACCAATCAACTTTTCTCGAAGCACGCTCGCACACTGCTCTGTGATGCCTGCGACGATTCCCCGGCCACAATACTTTGTTCTACTGAAAGCTCTGTTCTCTGCCAGAATTGTGACTGGGAAAGACACAACCTTTCGATATCTTCGGTGCATGACCGGAGGCCACTTGAGGGGTTCACTGGGTGCCCTTCCGTAACGGAATTGTTAACAATTATGGGTTTTGAAGATATGGGCAAAAAAGCTCTGTTTTCAACTGAGGACGGTGGCAGCGGCGGCGATGGTGATGGTTTTACGGGATCTGAGCTTGGGGGCCTTTCGGATTTATTTGTATGGGATGCTCCTGCTGTTGTTAGCCTGGACGATTTGATAACTTCTACAAGTTCGTCTCATAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCAACACAAAGAAGACATCATTAGCCAGCTTCGTGAGCTAGCAAAGTTGGAGCCGGACTTGATTTTCGGAGACGCTGATACTGAAAGACCGAGCTCTTTGCACCCTTTAGTCCCTGAACAATATTTGCAGTCAGGAAGTTTGTCCTCAGGTTTTGAACATACCATTGAGGCCGATATATTTCCTTGTGAGGCAGGTGTTTTTCAGTGGCCTAGAGATAGGAGTGAGACTGCAAATCAAGTTGTTCCTCCTAATAATGCATCTCTGAGAATTTATAAAGAGGAAATTTCTGATACACATTCATTTTCTGCTGTCTGTGGGAACCATGGCTATGATAGCAATGGAGGACAACCGCCAAGTTCTCTTAACTCTGAAACCTTATCGACCACTCCAAAAGTTGCTCCATATGAGCTAACAAGTCAAGAAAGAGATTCTGCATTATTACGTTACAAGGAGAAGAAGAAAACGAGAAGATATGACAAGCACATAAGGTATGAATCACGAAAAGTTCGAGCAGAAAGCAGGACAAGAATTAAGGGTCGATTTGCCAAGATGGAACACTGA 1167 0.4542 MSDSPKHPHPIPSDKDQAPHLERPCDYCGDSTALLYCRADSAKLCFSCDREVHSTNQLFSKHARTLLCDACDDSPATILCSTESSVLCQNCDWERHNLSISSVHDRRPLEGFTGCPSVTELLTIMGFEDMGKKALFSTEDGGSGGDGDGFTGSELGGLSDLFVWDAPAVVSLDDLITSTSSSHNYQAMEVPPLPKNRKAACGQHKEDIISQLRELAKLEPDLIFGDADTERPSSLHPLVPEQYLQSGSLSSGFEHTIEADIFPCEAGVFQWPRDRSETANQVVPPNNASLRIYKEEISDTHSFSAVCGNHGYDSNGGQPPSSLNSETLSTTPKVAPYELTSQERDSALLRYKEKKKTRRYDKHIRYESRKVRAESRTRIKGRFAKMEH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3300 388 SMART bboxneu5 20 67 IPR000315 GO:0008270
Glsi02g3300 388 SMART bboxneu5 68 109 IPR000315 GO:0008270
Glsi02g3300 388 CDD Bbox1_BBX-like 67 109 - -
Glsi02g3300 388 ProSiteProfiles Zinc finger B-box type profile. 63 109 IPR000315 GO:0008270
Glsi02g3300 388 MobiDBLite consensus disorder prediction 309 335 - -
Glsi02g3300 388 Pfam B-box zinc finger 23 63 IPR000315 GO:0008270
Glsi02g3300 388 Pfam B-box zinc finger 67 108 IPR000315 GO:0008270
Glsi02g3300 388 ProSiteProfiles CCT domain profile. 344 386 IPR010402 GO:0005515
Glsi02g3300 388 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 24 386 - -
Glsi02g3300 388 Pfam CCT motif 344 386 IPR010402 GO:0005515
Glsi02g3300 388 ProSiteProfiles Zinc finger B-box type profile. 25 67 IPR000315 GO:0008270
Glsi02g3300 388 CDD Bbox1_BBX-like 24 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3300 Glsi-ChrGlsi02 80902432 80904774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3300 22 359 C2C2-CO-like Transcription Factor Family AT2G47890 41.570 5.87e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Glsi02g3300 CCT 1.2e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3300 02 80902432 80904774 Glsi02g3300 02 80902432 80904774 ECH