Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3281 ATGCATGAGCATGCGGGCAATAAAAGTGCTTCGAATATATCGGCGCAAATTAGCAAACATCGCCAGCACCATTCAAGAGAGAGAGCATGTGTGGTGGCTTTAGCAGACATGACGAGGGTACGGCTTCTGAGCAGGAGGATGGATGGTATAGCTGCACCAAACAAGGGGCATGGCGCTGACTCTGCAAAATATGGTAGTGGAACTCCGAGATGTAACTATGGCAGTTTCCCCCTTGATGATATCAAAAACCAATGTGAGAGTGAGAAAGATCACATGTATACTACACTGTGGCATGCATGCGCCGGCCCTTCGGTTTATGTCCCTAGCGCGGGGGAACAAGTTTACTACTTCCCTCAAGGTCACTTGGAACAGATTGATGCTTTCGTTCGGCGAGATGATCATATGGAAATTCCTGTTTATGATTTGCCTCCCAAGATTCTTTGCAGGGTCATGAGTGTCCAGCTAAAGGCTGAAGATTACACAGATGAGGTTTTTGCTGAAATTACTTTAATTCCAGACTCAAAGCAAGATGGACCTAGTTCAGAGGATAAAGACTCTCGTCGGTTACCCTGCAGAACTATTGTCGGCTCCTTTAGTAAGACACTCACTCCATCAGATACAAGTGCACATGGTCAGCCAAAACGACACTTGCTTACCAGTGGTTGGAGCACCTTTGTGAATTCAAAAAAGCTTGTTGCCGGAGATACTTGCATTTTCCTTCGAGGGGAAAATGAAGAACTTCGAATTGGAATCCATCGAGCAATGAAACAACACAACAATGCATCAACATCCACATCTGTGATATCTGGCCACAGCATGCTACTTGGCATATTGTCGAGTGCTTCTAATGCTGTTACTACTGGATCCAGGTTCACTGTCTATTACAGACCTTGGACGAATCCCTCTGAATTCATTATTCCAGTGGATCACTACATGAAGTCAACTAAAATGCAATACTCATTTGGAATGAGGGTACAAATGCAGTTTGAAGCTGAAGAATCTACAAGGAGATCGGGAACCATAATTGGTATTGACGATCTTGATGGCATTAGGTGGCCTGGTTCAGAATGGAGATGTCTCAAGGTTCAAAGGGATGCCAAGCTAGATACATATATGCGTCCTGAAAGGGTTTGTCCCTGGAACATTGAGGCCTTAGAATCTGATAGGAAGCACATTCTTAATCTACCCTTACCCAAGAGGGCACGTGTAATTGACCCATCATTGCCTGGATTGTGTGGTTCTGCCAAGGATGCCATAGATCTGAATTCAGTCAAGCGTGCATCTCAGAGATCTGAAAGGGACTTACAAGGTCAAGATTACAATGAAGTAGGTTCTCAACAGCATGCGCAAAAACTATTATTAACAGATGTACTCCTACCATCAAATGTCACATTATATGACCCCCCTTTGAGGATGGAGAATCATCTGCACTTTCAAGTGCAAAACCCTCTTCGCCATTCTCTTGGCAGCTCAATATCATTTCCAGATGATAACATTTCGACTTCAAGCCTCCCCAAACAGCCCCAAGTCCTTACCACCTTTGAAGCATGCAATAATACCTCTGTCAACAGGTACATTTCAATGTCAAAAGTGAACTCCAGTAATTCTGAATCCCAGGGATGGCAGGCGTCTGAATCTAGGGATGAGAATGAAGTTCCTTTTGGCCAGCCAGGCGGTCATAGTAGAATTGAATACAAGCTTTTCGGGATTAGCTTAAACCACCCGGAGCTCCCTTCACCACAAGTTGCTGCATCCAGCAAGACTTCAAGTCTTCCTCCAATGTCTCAGTCCAGCATTTCTGCTACTATCTCAGTTTCCGAAACATCCAAGAGTATTTCAGGAGTTACCTCAAAGAAAAAATGCAAGAACTGTTGCTCTGTTAATAGGAGTTGCACAAAGGGATTTCCAGAGCAGGGTGCAAAAGATGATCATTTGTCCAAAGGAAGACATGAACACGCTGAATACTAG 1968 0.4426 MHEHAGNKSASNISAQISKHRQHHSRERACVVALADMTRVRLLSRRMDGIAAPNKGHGADSAKYGSGTPRCNYGSFPLDDIKNQCESEKDHMYTTLWHACAGPSVYVPSAGEQVYYFPQGHLEQIDAFVRRDDHMEIPVYDLPPKILCRVMSVQLKAEDYTDEVFAEITLIPDSKQDGPSSEDKDSRRLPCRTIVGSFSKTLTPSDTSAHGQPKRHLLTSGWSTFVNSKKLVAGDTCIFLRGENEELRIGIHRAMKQHNNASTSTSVISGHSMLLGILSSASNAVTTGSRFTVYYRPWTNPSEFIIPVDHYMKSTKMQYSFGMRVQMQFEAEESTRRSGTIIGIDDLDGIRWPGSEWRCLKVQRDAKLDTYMRPERVCPWNIEALESDRKHILNLPLPKRARVIDPSLPGLCGSAKDAIDLNSVKRASQRSERDLQGQDYNEVGSQQHAQKLLLTDVLLPSNVTLYDPPLRMENHLHFQVQNPLRHSLGSSISFPDDNISTSSLPKQPQVLTTFEACNNTSVNRYISMSKVNSSNSESQGWQASESRDENEVPFGQPGGHSRIEYKLFGISLNHPELPSPQVAASSKTSSLPPMSQSSISATISVSETSKSISGVTSKKKCKNCCSVNRSCTKGFPEQGAKDDHLSKGRHEHAEY 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3281 655 MobiDBLite consensus disorder prediction 533 555 - -
Glsi02g3281 655 Gene3D - 209 255 IPR015300 -
Glsi02g3281 655 ProSiteProfiles B3 DNA-binding domain profile. 215 255 IPR003340 GO:0003677
Glsi02g3281 655 FunFam Auxin response factor 318 388 - -
Glsi02g3281 655 MobiDBLite consensus disorder prediction 636 655 - -
Glsi02g3281 655 MobiDBLite consensus disorder prediction 1 24 - -
Glsi02g3281 655 MobiDBLite consensus disorder prediction 578 609 - -
Glsi02g3281 655 CDD B3_DNA 208 253 IPR003340 GO:0003677
Glsi02g3281 655 Gene3D - 318 390 - -
Glsi02g3281 655 Pfam B3 DNA binding domain 211 254 IPR003340 GO:0003677
Glsi02g3281 655 SUPERFAMILY DNA-binding pseudobarrel domain 197 254 IPR015300 -
Glsi02g3281 655 MobiDBLite consensus disorder prediction 629 655 - -
Glsi02g3281 655 Pfam Auxin response factor 281 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Glsi02g3281 655 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 210 633 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3281 Glsi-ChrGlsi02 80786602 80792990 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3281 92 443 B3 DNA Binding Superfamily AT5G62000 44.988 9.61e-104 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Glsi02g3281 Auxin_resp 5.9e-30 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3281 02 80786602 80792990 Glsi02g3281 02 80786602 80792990 ECH