Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3274 ATGGCGGAGGGGAAGGAAGAGAGCAAATCTAGCGAGGAGAGTGTGAAATTGTTCGTGGGTCAAGTGCCGAAGCATATGACGGAAGCTGAGCTTCTTACAATGTTCAAGGAGTTCGCTCTGGTGGACGAGGTCAACATCATCAAGGATAAAATCACTCGCTCCTCTCGAGGGTGTTGCTTTGTAATTTGTCCGTCGAGAGAGGAGGCAGACAAGGCGGTTAATGCGTGTCATAATAAGAAAACGCTACCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGAGAATTGGAAAGGCTAGAACACAAACTCTTTATCGGCATGCTTCCAAAGAATGTTTCAGAAGTTGAAGTGTCTGCTCTTTTCTCCAAGTATGGAACCATAAAGGATTTACAGATTTTAAGAGGTTCTCAGCAGACAAGTAAAGGATGTGCATTTTTAAAGTATGAAACCAAAGAACATGCCCTTGCTGCCCTGGAGGCAATCAATGGAAAACATAAAATGGAGGGATCAAGTGTTCCTTTGGTGGTCAAATGGGCAGATACTGAAAAGGAAAGACAAGCTCGGAGGGCTCAGAAAGCACAATCCCAAGCTTCTAATGTGCCACATACTGATTCTCAGCACCCGTCATTGTTTGGAGCCTTGCCAATGGGTTATGTTCCCCCATATAATGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCATACCGCTTGCCTCCGTTGCAGAATCAACCTGGTTTCCATAATATGATGCCTCACATGAATCAAGGAAATGCTATTGGACATGACCTTAGCCCCAATTTGAACCCTAGAAATTATCATGTGCCTCCTGCAAGTTACTTTGGCTCTTATCCTACAGTTCCAGGTTTACAACATCCAATGGCTTATCCTGGAGGAATGATAAGTCCAAGGCCTTTGAGTAGTTCTCCTGGTTCAGTTTCACCTGCAGGTGGGACTAGCAACTCTACTACATCTTTAGGCACCAGTAAAAATTCTGGCGGTCAGGTGGAAGGACCACCTGGTGCCAATCTCTTTATTTATCACATACCTCCAGAATTTGGAGATCAAGAGCTTGCAACTGCGTTTCAACCATTTGGTAGAGTATTGAGTGCTAAAGTATTTGTTGATAAAGCAACTGGTGTAAGCAAATGTTTTGGGTTTGTTAGCTATGAATCCCCAGAAGATGCTCAAGCAGCCATTAGTGTGATGAACGGATACCAATTAGGTGGTAAAAAATTAAAGGTTCAGCTTAAGAGGGACAACAAGCAGAGTAAGCCTTACTGA 1296 0.4429 MAEGKEESKSSEESVKLFVGQVPKHMTEAELLTMFKEFALVDEVNIIKDKITRSSRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNVSEVEVSALFSKYGTIKDLQILRGSQQTSKGCAFLKYETKEHALAALEAINGKHKMEGSSVPLVVKWADTEKERQARRAQKAQSQASNVPHTDSQHPSLFGALPMGYVPPYNGYGYQAPGGYGLMPYRLPPLQNQPGFHNMMPHMNQGNAIGHDLSPNLNPRNYHVPPASYFGSYPTVPGLQHPMAYPGGMISPRPLSSSPGSVSPAGGTSNSTTSLGTSKNSGGQVEGPPGANLFIYHIPPEFGDQELATAFQPFGRVLSAKVFVDKATGVSKCFGFVSYESPEDAQAAISVMNGYQLGGKKLKVQLKRDNKQSKPY 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3274 431 PANTHER RNA BINDING PROTEIN 14 425 - -
Glsi02g3274 431 FunFam RNA-binding protein BRN1 isoform X1 100 192 - -
Glsi02g3274 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 346 424 IPR000504 GO:0003723
Glsi02g3274 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 164 181 IPR002343 GO:0003723|GO:1990904
Glsi02g3274 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 15 30 IPR002343 GO:0003723|GO:1990904
Glsi02g3274 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 108 123 IPR002343 GO:0003723|GO:1990904
Glsi02g3274 431 PRINTS Paraneoplastic encephalomyelitis antigen family signature 123 135 IPR002343 GO:0003723|GO:1990904
Glsi02g3274 431 SUPERFAMILY RNA-binding domain, RBD 103 427 IPR035979 GO:0003676
Glsi02g3274 431 SMART rrm1_1 16 92 IPR000504 GO:0003723
Glsi02g3274 431 SMART rrm1_1 347 420 IPR000504 GO:0003723
Glsi02g3274 431 SMART rrm1_1 104 179 IPR000504 GO:0003723
Glsi02g3274 431 MobiDBLite consensus disorder prediction 185 208 - -
Glsi02g3274 431 Gene3D - 2 100 IPR012677 -
Glsi02g3274 431 Gene3D - 101 192 IPR012677 -
Glsi02g3274 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 15 96 IPR000504 GO:0003723
Glsi02g3274 431 CDD RRM1_2_CELF1-6_like 16 92 - -
Glsi02g3274 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 103 183 IPR000504 GO:0003723
Glsi02g3274 431 MobiDBLite consensus disorder prediction 302 341 - -
Glsi02g3274 431 MobiDBLite consensus disorder prediction 309 340 - -
Glsi02g3274 431 Gene3D - 323 430 IPR012677 -
Glsi02g3274 431 FunFam RNA-binding protein BRN1 313 423 - -
Glsi02g3274 431 SUPERFAMILY RNA-binding domain, RBD 9 97 IPR035979 GO:0003676
Glsi02g3274 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 105 168 IPR000504 GO:0003723
Glsi02g3274 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 348 418 IPR000504 GO:0003723
Glsi02g3274 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 17 81 IPR000504 GO:0003723
Glsi02g3274 431 FunFam RNA-binding protein BRN1 2 99 - -
Glsi02g3274 431 CDD RRM3_CELF1-6 348 420 - -
Glsi02g3274 431 MobiDBLite consensus disorder prediction 193 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3274 Glsi-ChrGlsi02 80762432 80766414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3274 345 431 Eukaryotic Initiation Factors Gene Family AT1G71770 34.483 4.49e-10 59.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3274 02 80762432 80766414 Glsi11g0567 11 3625043 3629018 CCT
Glsi02g3274 02 80762432 80766414 Glsi02g3274 02 80762432 80766414 ECH