Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3250 ATGTCCCTCCTCTTCTTCTTCATCTTCCTCACTTTCCCCCTTCTTTCCCTCTCTGCAAACGACACCCTTTTAACCGCTCCTTGCCCCCTCAACTTCACCGTCCTCCGCGTCGTCAGCGCCGGCTCCAGACCCCCCCTCGACCCCGCCACCCTCTGCCAGTACACCCGCCAAGCACTCCGTCTTGTTCAGTCCGATTACCTCCTCCGCACTGACTTCTTCCTCCCTCCTCTCAACTCTTCCGAAACATGCTGGGAGAAGTTCCAGTCCTTCGTCAACGAATTCGACTCCAACTTTGATGTTCGCTCCTCTTGTGGCTTCCAGACGAGCTGGATATCTCAAGGCTGTATGAACATCACCACCCGACAACAGTTCGAATCCTCGGTTTCCAAGTCAGCTCTTCAAGATGTTCAGAGAAATTGCAATCAATCGCTTGAGAATAACTCCCCCTGCGCCCTCTGCACGACGAGCTTGTCCAGCTTGCAAGCCTCGTTCTTGACAGGACCATCGATTGGGAACGTCTCTGATTGTACCGCCTATCCCTCAATTTACGCTGCTGCCTTTTCCAATCAGGGTGGGCCCACCGACGGAGGCACTGCTAAGTGCCTGTTCTTACTCGATTTCACGTCGCTAGATGCCAACGGTAAGAAACGAAAGATTGTTATTGTGGTTCTTGTGATTGTTTGTGTATTGGGTTTGTCGCTGTTAATCGGTGGGTTTGGGGTTTATTGGAGATTGAAGAAGAAGAAGAGAGTTCGTAAAACTGAGAGTAGTATGGTTTCTGGATTGGATTCCATAAACGAGAGCACTACTTTGATTAGGTTCGCATTTGAAGACATTAAGAAGGCAACTAGGAACTTCTTCAGGGACAATATAATTGGGAGAGGGGGCTATGGGAATGTGTACAAAGGGGTGCTGCAAGATGGGAGTGAAGTTGCATTAAAAAGGTTCAAGAATTGTTCGGCCGCAGGTGATGCAAGTTTCACTCATGAAGTTGAGGTTATTGCAAGCGTTAGGCATGTAAACCTTGTTGCTCTGAGAGGTTATTGTACTGCCACAACTCATTTAGAGGGTCACCAGCGGATCATCGTTTGTGATTTGATGAAGAATGGGAGTCTCCATGATCATCTTTTTGGGTCTATGGGTAGGAAACTCAGCTGGCCAATCCGTCAACAGATAGCACTGGGAACAGCAAGGGGATTGGCTTATTTGCATTACGGGGCTCAACCTGGCATCATCCATAGGGATATTAAAGCCAGTAATATACTTCTGGATGAGAAGTTTGAAGCGAAGGTAGCAGATTTTGGACTTGCAAAGTTCAACCCTGAGGGAATGACTCACATGAGCACTAGGGTAGCTGGAACAATGGGGTATGTTGCTCCAGAGTATGCATTGTATGGGCAGTTGACAGAGAGAAGTGATGTCTTCAGTTTTGGTGTAGTGCTTCTTGAGCTTCTGAGCGGGAGGAAGGCTCTTCAAACGAACAATGATGGCGAACCCACTGCTCTGAATGACTTGGCTTGGTCATTAGTTAGAGAAGGTAGAGCTTTGGATGTTATTGAAGATGGTATGCCAGAAGCGGGTTCACCGGAAGCTCTTGAGAAGTATGTGTTAATTGCTGTGCTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTGAAAATGTTGGAGACAGATCAATCAGTACCCTCCATACCAGAACGGCCTATTCCTCTGGTTTCTGGAAGGAGTGATATTGAGAAATCTGTGGGCAGCTTTGGCTCTGGTCAGCTCTCTAGTCCAACAGGGTATCAAGCATATGCATTTGAAAGTGACTGCCGTTCTTCTAATTCTAAGGAAGAAGGAAGTTCAGGCTCCAGAATAGCGAGTATAGATTGA 1890 0.4751 MSLLFFFIFLTFPLLSLSANDTLLTAPCPLNFTVLRVVSAGSRPPLDPATLCQYTRQALRLVQSDYLLRTDFFLPPLNSSETCWEKFQSFVNEFDSNFDVRSSCGFQTSWISQGCMNITTRQQFESSVSKSALQDVQRNCNQSLENNSPCALCTTSLSSLQASFLTGPSIGNVSDCTAYPSIYAAAFSNQGGPTDGGTAKCLFLLDFTSLDANGKKRKIVIVVLVIVCVLGLSLLIGGFGVYWRLKKKKRVRKTESSMVSGLDSINESTTLIRFAFEDIKKATRNFFRDNIIGRGGYGNVYKGVLQDGSEVALKRFKNCSAAGDASFTHEVEVIASVRHVNLVALRGYCTATTHLEGHQRIIVCDLMKNGSLHDHLFGSMGRKLSWPIRQQIALGTARGLAYLHYGAQPGIIHRDIKASNILLDEKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQTNNDGEPTALNDLAWSLVREGRALDVIEDGMPEAGSPEALEKYVLIAVLCSHPQLYARPTMDQVVKMLETDQSVPSIPERPIPLVSGRSDIEKSVGSFGSGQLSSPTGYQAYAFESDCRSSNSKEEGSSGSRIASID 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3250 629 Pfam SPARK 26 162 IPR043891 -
Glsi02g3250 629 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 247 365 - -
Glsi02g3250 629 Pfam Protein kinase domain 289 500 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3250 629 ProSiteProfiles Protein kinase domain profile. 286 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3250 629 Gene3D Phosphorylase Kinase; domain 1 244 365 - -
Glsi02g3250 629 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Glsi02g3250 629 MobiDBLite consensus disorder prediction 608 629 - -
Glsi02g3250 629 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 79 615 - -
Glsi02g3250 629 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 367 568 - -
Glsi02g3250 629 CDD STKc_IRAK 292 561 - -
Glsi02g3250 629 Gene3D Transferase(Phosphotransferase) domain 1 367 568 - -
Glsi02g3250 629 SMART serkin_6 286 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3250 629 SUPERFAMILY Protein kinase-like (PK-like) 270 580 IPR011009 -
Glsi02g3250 629 ProSitePatterns Serine/Threonine protein kinases active-site signature. 411 423 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3250 Glsi-ChrGlsi02 80604815 80606704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3250 4 615 Receptor kinase-like Gene Family AT2G48010 64.239 0.0 791
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Glsi02g3250 Pkinase 1.3e-42 CL0016