Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3232 ATGGACGCTGAAGCAGACCATCCTGAAACCCCAGCCAAAAGGCACAAATGCTCGGCATGCTATAGGCAATATAAGAAAAAGGAGCATCTCATTGAGCACATGAAAATCTCATACCACTCAGTCCATCAGCCTAAATGTGGGGTATGTCAAAAGCACTGCAAATCTTTTGAATCTCTGAGGGAACACCTTACTGGTCCATTACCAAAAGGAAATTGTGCTGAGGTCTTCTCTCTACATGGTTGTCAGCTTTGCTTAAAACTATTTGATAGCCCCAGATCTCTCATCGAGCATAAAGAAAAATGTTGTCTATGTGCACCGATTCCTCTTGGAACAAGCGCATTGCCCTATATAAGATCTCAAATTCATTGTCCAGATTCTATTGATGAAAAGCACACTGACATATGCCCTGGAGCAATTGCGATTGACTGTGAAATGGTTGGTGGTGGAAGTGATGGATCACTAGACCTTTGTGCTAGAGTTTGCCTGGTTGATGAAGATGAGAATTTAATTTTCCACACCTTTGTACAGCCTCAAATCCCAGTTACTAACTATAGATATGATATAACTGGATTGACAGAAGAGCATCTTAGAGATGCCATGCCACTTAAGGAAGTTCAAGAAAAGGTATTGCAAATTCTGTACAATGGAGAGTCCATTGGCAAAGTTAGATTGGATGGTGGAAAGGCCAAGCTTCTTGTGGGGCATGACCTAGAACATGATTTCGATTGCCTGCAATTAAACTATCCTGATCACATGTTGAGGGACACTGCAAAGTATCGTCCATTGATGAAAACAAACTTGGTCAGTCATTCACTTAAGTACCTTACCCGAACATATTTAGGTTATGACATCCAGGCAGGAACACATGACCCATATGAAGACTGTGTTTCCGTCATGAGGCTGTACAAGAGAATTCGAAGCCAAATTCATCGGGAGGAAAGCTTTGGAACATCGACTCTAGGTAACATCGTTGGCACCTCTGATTACTGGAGATCCAAGGAAGTTGAGAACTCCACACATGATGAACTCTATGGCATCTCAAAATCAGACTATAGGTGTTGGTGTTTGGATTTGATATAG 1080 0.4185 MDAEADHPETPAKRHKCSACYRQYKKKEHLIEHMKISYHSVHQPKCGVCQKHCKSFESLREHLTGPLPKGNCAEVFSLHGCQLCLKLFDSPRSLIEHKEKCCLCAPIPLGTSALPYIRSQIHCPDSIDEKHTDICPGAIAIDCEMVGGGSDGSLDLCARVCLVDEDENLIFHTFVQPQIPVTNYRYDITGLTEEHLRDAMPLKEVQEKVLQILYNGESIGKVRLDGGKAKLLVGHDLEHDFDCLQLNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQAGTHDPYEDCVSVMRLYKRIRSQIHREESFGTSTLGNIVGTSDYWRSKEVENSTHDELYGISKSDYRCWCLDLI 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3232 359 Pfam Exonuclease 139 302 IPR013520 -
Glsi02g3232 359 SMART exoiiiendus 137 311 IPR013520 -
Glsi02g3232 359 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Glsi02g3232 359 Gene3D - 137 317 IPR036397 GO:0003676
Glsi02g3232 359 Gene3D Classic Zinc Finger 2 65 - -
Glsi02g3232 359 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 18 309 IPR047021 GO:0004527
Glsi02g3232 359 CDD REX4_like 139 303 IPR037431 GO:0006364|GO:0008408
Glsi02g3232 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Glsi02g3232 359 SUPERFAMILY Ribonuclease H-like 139 306 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3232 Glsi-ChrGlsi02 80519086 80523157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3232 1 357 C2H2 Transcription Factor Family AT3G27970 53.073 2.84e-140 400