Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3220 ATGACCATTTCAATGGTAATGTGCAGATTAACACAACCACTAATAAATATCCCTTCAGGTGGTGGCTCAAAAATAAATGTGACCACTCTTCCCCGGCACAAGGAGAAGGTAGTGTTGGTCATGGGAGCCACCGGCACCGGAAAGTCTAGGCTCTCCATCGACCTCGCCAACCGTTTTCCCGCGGAAATCATCAACTCCGACAAAATGCAAGTCTACGAAGGACTTGACATAGTCACAAACAAAATCCCCCCGGAAGAGCAACGCGGGGTGGCTCACCATTTGCTAGGAACCCAGAATCCTGACTCAGAATTTACAGCTACTAATTTCTGCCACATGGCCTCACTTGCCATTGAGACAATCACGGATCGTGGGAAGCTTCCGATCATAGTCGGAGGCTCCAATTCGTACGTTGAGGCCCTAGTTGACGATGACGACTATAAATTCCGATCAAGGTACGACATCTGTTGTCTTTGGGTAGACGTGTCCATGCCTGTTCTTCATTCCTATGTAGCAGAACGGGTTGATCAAATGTTTGAGAATGGAATGGTGAATGAATTGAGACCATTTTTCAATTCCGACGGGGATTATTCTCGAGGAATTCGAAAAGCAATTGGGGTTCCGGAATTTGATCAATATTTTCGAAGCGAAGCATTTGCAGATGAAGAAACGAGGGAGAGGCTGTTGGAAGAAGCAATAAGTGAAATGAAGGAGAATACGTACAAATTGGCACGGAAACAATGGGGGAAGATTCAGAGCCTCCGAAATGTAAAGAGATGGAAGATTGAGCGCCTAGATGCGACGCCGGTATTTAGAAAGCATGGGGAAGAGGCAAACGAGGCATGGGAGAAGCAGGTGGCAGAGCCAAGTGCTATGATCGTCGCACAGTTTCTTCACACCTTCACCACTCCCAAAGTCTCTGCTGGGCTGAGATTGCCGTCCCTCGAGAGTGCCATTGCTACGGTATCTGGTCATCTTCGATCTATAGGGGCACACTCGTGCCCAGTGTAA 1008 0.4782 MTISMVMCRLTQPLINIPSGGGSKINVTTLPRHKEKVVLVMGATGTGKSRLSIDLANRFPAEIINSDKMQVYEGLDIVTNKIPPEEQRGVAHHLLGTQNPDSEFTATNFCHMASLAIETITDRGKLPIIVGGSNSYVEALVDDDDYKFRSRYDICCLWVDVSMPVLHSYVAERVDQMFENGMVNELRPFFNSDGDYSRGIRKAIGVPEFDQYFRSEAFADEETRERLLEEAISEMKENTYKLARKQWGKIQSLRNVKRWKIERLDATPVFRKHGEEANEAWEKQVAEPSAMIVAQFLHTFTTPKVSAGLRLPSLESAIATVSGHLRSIGAHSCPV 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3220 335 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 34 297 IPR039657 -
Glsi02g3220 335 Pfam IPP transferase 70 143 - -
Glsi02g3220 335 Pfam IPP transferase 149 246 - -
Glsi02g3220 335 FunFam Adenylate isopentenyltransferase 5, chloroplastic 34 185 - -
Glsi02g3220 335 FunFam Adenylate isopentenyltransferase 5, chloroplastic 163 261 - -
Glsi02g3220 335 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 37 144 IPR027417 -
Glsi02g3220 335 Coils Coil 218 238 - -
Glsi02g3220 335 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 261 - -
Glsi02g3220 335 Gene3D - 34 297 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3220 Glsi-ChrGlsi02 80445625 80446632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3220 150 301 C2H2 Transcription Factor Family AT2G27760 33.520 1.72e-19 87.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3220 02 80445625 80446632 Glsi11g0611 11 3855745 3861580 CCT
Glsi02g3220 02 80445625 80446632 Glsi02g3220 02 80445625 80446632 ECH