Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3218 ATGATGTCGTTTAACTCGGGGGGAACTAGCAATCATGTCTGTCGTTCAGCTGAGGATGATCCAAACCCACTTTTTGTTGATGCAGCAGCTGGTGGAAGGAATGGGAGCCAGTACTGGAGTTGCCTTCCAGAACCATTTCATAACTATGTTGAGTATCTCACAGAAACCTCAGCTTATCTGCCGAAGACTATAACCGAATATGCGCTTGGGAGCAGTTATCCACCTGTTAATGGGGTTAATGGAAATGACAGAAACTTGTTTTACAATGATCCAGGAAAAGCTTGTGGCTTTAAACCTAGTGATTATTCTACTGACATAGAGTTTACGAAGCAGATGTGGTTCTGGAAGCCAGATAATGAAGACGACCAAGCAATGAAATTTGCAAGTAAACAACATGATCTTCGCGCTGAGAGTCATGCTTCGTGGACATCAGAGTTAACTAAAGATAAAAATCATGTTTCACAACTTGATCCAACTGGTTTCCTTCTCAAACCACGAAGTAGCTCATCAAGACAGAAATCCAGTGCCGCCGACCGTCAACGCAGGCAACGTATTGCTGATAACCTCAAAGCCTTGCACGACTTGTTGCCAACTCCAGCAGAGGGTAGTCAAGCATATATACTGGATGACATCATTGACTATGTCAAATATTTGCAGCTTCAGATTAAGGAATTAAGTAGAAGCAGGTTGCAAGGTGAATCAACTGCTATGCCACTCACTTTTCGTGAGGGTTACGGCCATTATAATAACCAACAGATGCTGAATGAACCCCTTGAGGAAATGATGGGAAAACTACTTGAGGAACATCAAGCAGCAGCCGCTCAGCTGTTAGAGAGCAAGGGCCTTTTTCTGCTGCCTATGGCTTTGGTTGAAGACTTGCGCCAAGCTATGCAGATGTTTGGCGGCATTCCACACGTCTAA 921 0.4408 MMSFNSGGTSNHVCRSAEDDPNPLFVDAAAGGRNGSQYWSCLPEPFHNYVEYLTETSAYLPKTITEYALGSSYPPVNGVNGNDRNLFYNDPGKACGFKPSDYSTDIEFTKQMWFWKPDNEDDQAMKFASKQHDLRAESHASWTSELTKDKNHVSQLDPTGFLLKPRSSSSRQKSSAADRQRRQRIADNLKALHDLLPTPAEGSQAYILDDIIDYVKYLQLQIKELSRSRLQGESTAMPLTFREGYGHYNNQQMLNEPLEEMMGKLLEEHQAAAAQLLESKGLFLLPMALVEDLRQAMQMFGGIPHV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3218 306 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 166 234 IPR036638 GO:0046983
Glsi02g3218 306 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 105 289 - -
Glsi02g3218 306 SMART finulus 175 224 IPR011598 GO:0046983
Glsi02g3218 306 Pfam Helix-loop-helix DNA-binding domain 171 219 IPR011598 GO:0046983
Glsi02g3218 306 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Glsi02g3218 306 CDD bHLH_AtbHLH_like 177 226 IPR045239 -
Glsi02g3218 306 Gene3D - 167 237 IPR036638 GO:0046983
Glsi02g3218 306 MobiDBLite consensus disorder prediction 155 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3218 Glsi-ChrGlsi02 80428227 80430190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3218 163 296 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.235 6.71e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3218 HLH 2.3e-07 No_clan