Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3213 ATGGCCCCTCCGAGTTCACAATCACACACAAACAGCGGAAAGAGGAAGGACCTTGACGATGAAAAGGCTCGACTGTTAAAGTGCAAGAGAAGAAAAGCAACTATGTTCAAGAAATGCCATGAACTTGCTGTGAAGAGCGATGCTCAAGTTTGTGTGGTTTGTGTCGGGGCTGAGGGAGAAATTGAGGTATGGCCAAACCCTGAGAAAGCTAAGGCCATGCTCATGAAGCACAAAGAAGAACGTGCTGAAAAGAAAGATGAGACGGAGAAGGCAAAACACTTGGACAAGTCGAAAACAGAGGAAAAGGGTAAAGGGGAGAACGATTCTTGTAAACTATCGGATGAGTTAGACTCAAAATTAGAAACTTTGAATGAAAAAATCCAGAAACTGAATAATAGCAAAGCTACCTATAAAAAAAATTCTGCAAACTTCACAGGTGTTTATGCATCGAATGATCTGTTGCCATACCAGCCAGGGTTTTCTTGGGTAGAACCAAATCAACCAATCCACTATACAGAAGACTCAATGGCAGTTTCTGTGGATATGGGGAGTACATTTAATAGCAGCAATAGCTATAACAGATGGTGGGTTCCGCAGAGCAATGGAGATTTTGCAATGAATGAGACTTGGCAGTCAGAATTGATCGGTATAAAAGAGGCAAAAGACTATAGTGCAATAAGGGAAAATCAAGGGCCATCTGCGTTCTGTGGTTCGAGCATGAGTGGAGAAGATAATATTGGGGCAATATGTTATCCTCCTTTGGAAAGGTGA 771 0.4215 MAPPSSQSHTNSGKRKDLDDEKARLLKCKRRKATMFKKCHELAVKSDAQVCVVCVGAEGEIEVWPNPEKAKAMLMKHKEERAEKKDETEKAKHLDKSKTEEKGKGENDSCKLSDELDSKLETLNEKIQKLNNSKATYKKNSANFTGVYASNDLLPYQPGFSWVEPNQPIHYTEDSMAVSVDMGSTFNSSNSYNRWWVPQSNGDFAMNETWQSELIGIKEAKDYSAIRENQGPSAFCGSSMSGEDNIGAICYPPLER 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3213 256 ProSiteProfiles MADS-box domain profile. 16 68 IPR002100 GO:0003677|GO:0046983
Glsi02g3213 256 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g3213 256 Gene3D - 20 103 IPR036879 GO:0003677|GO:0046983
Glsi02g3213 256 SUPERFAMILY SRF-like 16 78 IPR036879 GO:0003677|GO:0046983
Glsi02g3213 256 SMART madsneu2 10 66 IPR002100 GO:0003677|GO:0046983
Glsi02g3213 256 Coils Coil 74 94 - -
Glsi02g3213 256 MobiDBLite consensus disorder prediction 77 111 - -
Glsi02g3213 256 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 19 63 IPR002100 GO:0003677|GO:0046983
Glsi02g3213 256 Coils Coil 113 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3213 Glsi-ChrGlsi02 80417855 80418625 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3213 23 96 MADS-box Gene Family AT3G18650 35.065 8.92e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Glsi02g3213 SRF-TF 1e-09 No_clan