Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3212 ATGACATGTGAAGAGACACGGAGAGATTTGAAAAGAAAATTCCCACATGTGGATCAAAGGCAAGAACATGGATCTTATGATAGAAATATGCTTCCTCCTGGTTGGTTAGACTGCCCAGCATATGGTCAAGAAATAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCGATGATATCATTCCAAGTCAAAAATATTCTCCCAAGCAAGCAATTCTTCAACAAAGACTTTTGGGTAGAGAAATCGGTTTAGTGATTGATTTGACAAATACTACTCGTTACTACCCACTATCAGATTGGACAGGAGAAGGGATTGATCATGTTAAGATAAGATGCAAAGGAAGAGATTCTGTACCTGATGATGAATCTGTAAACAAATTTTACAATGAGGTTCTTGATTTTTCCTCCCGAAGAACAAACCCAAAGAAATATATACTTGTGCATTGCACACATGGGCATAATCGAACTGGTTATATGATTGTTCATTTTCTTGTGCGCACGGAATCAATTTCTGTCACTGAGGCAATAAATAAATTTGCTTGGGCACGTGACCCTGGAATTTACAAGCAGGATTATATTGATGCTCTTTACATGTATTATCATGAAAAGAAGCCTGAAGAAGTTGTTTGTCCTCAAACTCCAGAATGGAAGAGACTTTCTGATCCTGATTTTCATGGTGCTGTTGTCCCAACTGTAGAAAATTGTGGAGATGTTCCTCTGCATGACAATGCCATGAGGAATGAAGTATTGACAAACGATGATGTTTTGGGAGATCCTGTACCTTCAAATCAACTGAATACTATGCGACACGAATGTTATCAACTGCTTAAGATGAGCAAAGGGGGAAGAGGATGTTTGCAGTTTCCTGGATCACATCCTGTTTCCCTCAACAGGGACAAGCTGCAACTCTTAAGACAGCGGTATTACTATGCCACATGGAAAGCTGATGGGACACGATACATGATGCTCATTACTTCAGATGGATGTTATCTAATTGACAGAAAATTTCATTTCCGAAGGGTCCATATGCGGTTTCCTTGCAGATATTTCAATGGGGGCACACCTGAAAGGAATCACCACTACACGTTACTTGATGGGGAGATGATAATTGACATGGATCCACATACAAAGAAGCAGGAGAGAAGATACCTTATTTATGATCTGATGGCAATTAATCAAGTCTCTGTGACTGAGCGGCCTTTCTATGAACGGTGGAAATTGCTAGAGAAAGAAGTGATTGAACCTCGTAACATGGAACGTGAGGCTCTTTGCAAGAGTACAAATCCTTATTATCGATATGATTCGGAACCATTTAGTGTGAGGAGGAAGGGTTTTTGGTTACTGTCTACTGTTTCAAAGCTCCTCAAAAAGTTCATTCCACAACTCTCACATCCATCAGATGGTCTTATATTCCAGGGTTGGGATGATCCATATGTCCCTCGTACACATGAAGGTCTTCTGAAGTGGAAATACCCTGAAATGAACTCAGTTGATTTCCTCTTTGAGTTGGGAGCTCGTGACCGTCCCTTGCTTTTTCTGCATGAACGTGGAAAGAAGAAATTAATGGAAGGGAATAGGGTTATTTTTAAAGATGCATCAGATGTGTCTTCCTATTCAGGGAAAATCGTTGAATGCTCCTGGGATCCTGACGAGAATCATTGGGTCTGTATGCGGATTAGGATCGACAAATCAACTCCAAATGAGGTCAATACCTATAGAAAGGTTATGCGAAGCATAAAGGATAACATTACAGAAGAGGTTGTTTTGAATGAGATCGACGAGATCATACGCCTGCCCCTGTATGCAGACAGAATACAAAGGGATATCAAGGCTCACCAACATATGGTCTCTGCAAGGCGCAGGTGA 1872 0.4071 MTCEETRRDLKRKFPHVDQRQEHGSYDRNMLPPGWLDCPAYGQEIGCIIPSKVPLGESFDDIIPSQKYSPKQAILQQRLLGREIGLVIDLTNTTRYYPLSDWTGEGIDHVKIRCKGRDSVPDDESVNKFYNEVLDFSSRRTNPKKYILVHCTHGHNRTGYMIVHFLVRTESISVTEAINKFAWARDPGIYKQDYIDALYMYYHEKKPEEVVCPQTPEWKRLSDPDFHGAVVPTVENCGDVPLHDNAMRNEVLTNDDVLGDPVPSNQLNTMRHECYQLLKMSKGGRGCLQFPGSHPVSLNRDKLQLLRQRYYYATWKADGTRYMMLITSDGCYLIDRKFHFRRVHMRFPCRYFNGGTPERNHHYTLLDGEMIIDMDPHTKKQERRYLIYDLMAINQVSVTERPFYERWKLLEKEVIEPRNMEREALCKSTNPYYRYDSEPFSVRRKGFWLLSTVSKLLKKFIPQLSHPSDGLIFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLFELGARDRPLLFLHERGKKKLMEGNRVIFKDASDVSSYSGKIVECSWDPDENHWVCMRIRIDKSTPNEVNTYRKVMRSIKDNITEEVVLNEIDEIIRLPLYADRIQRDIKAHQHMVSARRR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3212 623 Pfam mRNA capping enzyme, C-terminal domain 497 590 IPR013846 -
Glsi02g3212 623 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 256 493 - -
Glsi02g3212 623 FunFam mRNA capping enzyme family protein 491 600 - -
Glsi02g3212 623 Gene3D - 493 585 IPR012340 -
Glsi02g3212 623 SMART dsp_5 54 204 IPR020422 GO:0006470|GO:0008138
Glsi02g3212 623 Gene3D DNA ligase/mRNA capping enzyme 253 492 - -
Glsi02g3212 623 ProSitePatterns Tyrosine specific protein phosphatases active site. 149 159 IPR016130 GO:0016311|GO:0016791
Glsi02g3212 623 PIRSF mRNA_capping_HCE 17 623 IPR017074 GO:0004484|GO:0006370|GO:0140818
Glsi02g3212 623 CDD RNA_5'-triphosphatase 34 200 - -
Glsi02g3212 623 FunFam mRNA capping enzyme family protein 27 239 - -
Glsi02g3212 623 Pfam mRNA capping enzyme, catalytic domain 294 492 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi02g3212 623 Pfam Dual specificity phosphatase, catalytic domain 76 202 IPR000340 GO:0008138|GO:0016311
Glsi02g3212 623 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 31 219 IPR029021 -
Glsi02g3212 623 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 127 196 IPR000387 GO:0016311|GO:0016791
Glsi02g3212 623 CDD Adenylation_mRNA_capping 265 493 IPR001339 GO:0004484|GO:0005524|GO:0006370
Glsi02g3212 623 MobiDBLite consensus disorder prediction 1 26 - -
Glsi02g3212 623 ProSiteProfiles Dual specificity protein phosphatase domain profile. 53 208 IPR020422 GO:0006470|GO:0008138
Glsi02g3212 623 PANTHER MRNA-CAPPING ENZYME 26 604 - -
Glsi02g3212 623 Gene3D Protein tyrosine phosphatase superfamily 6 225 IPR029021 -
Glsi02g3212 623 MobiDBLite consensus disorder prediction 1 25 - -
Glsi02g3212 623 FunFam mRNA capping enzyme, putative 253 490 - -
Glsi02g3212 623 SUPERFAMILY Nucleic acid-binding proteins 495 608 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3212 Glsi-ChrGlsi02 80408278 80416451 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3212 19 623 Protein tyrosine phosphatase (PTP) family AT3G09100 63.622 0.0 788