Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3205 ATGGCTGCGCCGCCAAATAGCACGCTCCAAAGCATGTTACAAGCTGCGGTGCAATCTGTGCAGTGGACTTATAGCCTCTTCTGGCAACTTTGTCCTCAACAAGGGATTCTGGTGTGGGGTGATGGGTACTACAATGGGGCAATTAAGACTCGGAAGACAGTGCAGCCGATGGAGGTAAGCGCCGAGGAGGCCTCTCTTCAAAGAAGCCAACAACTTAGAGAGCTCTATGAATCCTTGTCTGCCGGAGAGACCAACCCACCCACGCGCCGCCCTTGTGCTTCCTTATCTCCGGAGGACCTCACCGAATCTGAATGGTTCTATTTGATGTGTGTCTCATTCTCCTTTCCTCCCGGCGTCGGGTTACCGGGAAAAGCATATGCGAGGAGGCAGCATATATGGCTGGCTGGTGCCAACGAGGCGGAGAGCAAGACGTTTTCTAGAGCTATTCTTGCAAAGGTTCAAGAAGACCCTCATTTCATTGAACAAGTTAAGACCTTCTTCCTAAACCACCAGAACCAGAACCACCCTCCCCCCCCAAAGCCTGCCCTCTCCGAGCACTCCACCTCCAATCCCACCCCCTCATCCGACCACTCCCACTTCCACTCCCCTCCCGTTGCCCCCGCTATGTACGCTGTGGTGGACCCACCGGCTGTCAGCCCGGCTGCCAATCCCCCCAACCAAGAAGAAGACATGGACCAAGATGACGACGATGACGAAGAGGAAGGTGACTCCGAGTCCGAATCGGATGCAGAAATAGTTCGTAACAGCGACCCAACATCGACACCGAATGGTCCAGGCATAGGAGGCGAACCAAGCGAGCTAATGCAGCTGGAAATGTCGGAAGATATACGAGTCGGATCACCGGATGATGGGTCGAACAACCTGGACTCGGATTTCCATTTGCTAGCGGTGAGTCGGGCGGGTGGGGCTCAACCACCAGCTTCAGTAGGTCGTACACCTCTAGGGGAAGACGTGACCGAAGGACATACCCACTACTCTCAAACGGTGTCCATCGTCCTACAAAATCAGCCCGCGCACTGGTCACAAACACCCTCCGTTGGCTACGTTGCTTACTCCTCCCAATCTGCTTTTGCCAAGTGGAACACTCACGCTGACCAACACCTCCTCCTCAACCTGGAAGGAGCCTCTCAATGGTTCCTCAAGTATGTTTTGTTTAGCGTCCCACTCCTCCACACCAAGTACCACGACCAGAATTCTCCCAGATCCAGAGATGTTGCCGACCCGGTCGCCCGCTTGCGCACCAGGGGAACGCCGCAGGACGAGCTCAGCGCCAACCATGTCCTGGCCGAGCGCCGCCGCCGCGAGAAACTCAACGAGAGGTTCATCATACTGAGGTCGCTGGTCCCCTTCGTCACCAAAATGGACAAGGCCTCCATATTAGGGGACACCATCGAGTACGTGAAGCAGTTGCGTAAAAAGATTCAGGATCTGGAGGCTCGTAACCGCCAGATGGAGGGGGATCAACGGTGTAGGTCGTTGGAGCTCCAAAGGACGAGCAGCTCAAAAGAACAACAAACAAGGAGCGGGGTGTCGACGTCGGTGATGGATCGGAGTCGGGTGGGGCGGGAGAAGAAGAAGTTGAGGGTGTTGGAGGGGAGTAATGGGGCGACGACAACGAAGGCGGCGGAGGTAGTGACGTCGGTGCAGGTGTCGATCATAGAGAGCGACGCTTTGTTGGAGCTGGAATGCGAGTATAGGGAGGGGTTGTTGCTGGAAGTGTTGGAAATGCTGCGAGAGATGAGGATAGAGGTGACGGGAGTGCAGTCATCGGTGAACAATGGGGTGTTTGTGGCAGAGTTGAGGGCGAAAGTGAAGGAAAATCAGAAGGGGAAGAAGGCCAGCATTGTGGAAGTCAAGAGAGCACTGAATCAAATTATACCTCATACTGACTACTAA 1917 0.5477 MAAPPNSTLQSMLQAAVQSVQWTYSLFWQLCPQQGILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYARRQHIWLAGANEAESKTFSRAILAKVQEDPHFIEQVKTFFLNHQNQNHPPPPKPALSEHSTSNPTPSSDHSHFHSPPVAPAMYAVVDPPAVSPAANPPNQEEDMDQDDDDDEEEGDSESESDAEIVRNSDPTSTPNGPGIGGEPSELMQLEMSEDIRVGSPDDGSNNLDSDFHLLAVSRAGGAQPPASVGRTPLGEDVTEGHTHYSQTVSIVLQNQPAHWSQTPSVGYVAYSSQSAFAKWNTHADQHLLLNLEGASQWFLKYVLFSVPLLHTKYHDQNSPRSRDVADPVARLRTRGTPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYVKQLRKKIQDLEARNRQMEGDQRCRSLELQRTSSSKEQQTRSGVSTSVMDRSRVGREKKKLRVLEGSNGATTTKAAEVVTSVQVSIIESDALLELECEYREGLLLEVLEMLREMRIEVTGVQSSVNNGVFVAELRAKVKENQKGKKASIVEVKRALNQIIPHTDY 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3205 638 Gene3D - 428 500 IPR036638 GO:0046983
Glsi02g3205 638 PANTHER TRANSCRIPTION FACTOR TT8 3 634 - -
Glsi02g3205 638 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 428 477 IPR011598 GO:0046983
Glsi02g3205 638 MobiDBLite consensus disorder prediction 489 524 - -
Glsi02g3205 638 MobiDBLite consensus disorder prediction 500 522 - -
Glsi02g3205 638 MobiDBLite consensus disorder prediction 185 199 - -
Glsi02g3205 638 SMART finulus 434 483 IPR011598 GO:0046983
Glsi02g3205 638 MobiDBLite consensus disorder prediction 228 247 - -
Glsi02g3205 638 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 153 IPR025610 -
Glsi02g3205 638 Pfam Helix-loop-helix DNA-binding domain 431 478 IPR011598 GO:0046983
Glsi02g3205 638 MobiDBLite consensus disorder prediction 170 272 - -
Glsi02g3205 638 Coils Coil 467 494 - -
Glsi02g3205 638 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 430 496 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3205 Glsi-ChrGlsi02 80373785 80378120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3205 284 635 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 39.045 3.07e-59 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi02g3205 bHLH-MYC_N 1.5e-33 CL0161