Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3199 ATGGTAGATCACTCAACCGTCGCTAGCCGTTCCGGAGTTCGAGTCGCCGTCGTCGGTGATAGAGGTACCGGCAAATCGAGTTTGATTGCTGCTGCGGCATCTGAGTCCTTTCCCGACACCGTCCCGCCCGTGCTTCCGCCCACTTCCTTGCCTGATGATTGGTTCCCCGACCATGTTCCTCTTACCGTCATCGACACATCTTCCAGCTTGGAAAAACAAGGCAAGCGCAATGAAGAATTGAAGCGAGCTGACGTAGTAGTTTTAACATATGCTTGTGATGAACCGACAAGCATTACTCGTCTGAGTACTTACTGGCTTCGTGAACTAGAGAAGTTGGAGGTGAAGGCACCTGTAATTGTGGTTGGTTGCAAGCTAGATCTGCAAGATGAGAACCAGCAGGTGAGCTTAGAGAATCTCATGTCACAGCTCCTACAACAGTTCAAGGCAATCCCAACCTGTATGGAGTGCTCTGCAGCTACGCTAGATCAGGTCCCTGAAGTTTTTTATTTTGCTCAAAAGGCGGTACTGCATCCGATAGATCCATTGTTTGATTATGAAAGTCAAGCTCTAACAGATCGATGTTTAAGGGCATTGAGAAGACTATTTGTTCTTTGTGATAGAGACATGGATGATGCCCTTAATGATGCAGAGCTAAATGATTTTCAGGTTAGATGTTTCGATACACCATTGCAGCCATCTGAAATAGTGGGAGTCAAAACAGTTGTTCAGCAGAAAGTACCAGAGGGAGTCAACGGGCTTGGTCTTACTTTTCCAGGCTTTGTTTATGTCAATAACATGTTCCTGAAGAAAGGGCGTCCTGAGACAATATGGACTATTCTAAGAAAATTTGGATATGATAATGATTTAAAACTCCGGGATGATTTCCTTCCTGTTCCATCTAAGCTTGCTCCTGGTCAGAGTGTGGAGCTGACAAGTGAAGCTGTAGAGTTTCTGAATGGTATCTTCCGATTGTTAGATTCGGATAGAGACCGAGCCCTGCGACCTGCGGAGCTTGATAAGTTATTTTCTACAGCTCCAGAAAGTCCATGGAACGATGCTCCATATAAGGATGCTACTGAGAGAACCAACTCAGGTTACATATCTCTGAGTGGATATCTGTCTCAGTGGGCCCTCATGACATTACTTGATCCGCCACGTAGCTTGGCTAATTTGATTTACATTGGATATAGTGGCAATCCTGCTGCAGCTCTCCGTGTTACTCGTAGAAGATCAGTAGATCGCAAGAAGCAAAAAACAGAAAGAAATGTGTTCCAATGCTATGTCTTTGGTTCAAAAAATGCTGGGAAATCTACCCTATTATATTCATTGTTGGGAAGGAATTTCTCAGATAATTATACTTCGACAACAATTGAGCAATATGCTGCAAATGTTGTTGAATTAATTGGGGGGACTAGGAAAACTCTTATATTGCGGGAGATACCAGAGGATGGAGTAAACAAATTTTTGTCAAATCGGGATTGTTTGGCAGCATGTGATGTAGCTGTTTTTGTATATGACAGTTCAGATGAACATTCATGGAAAAAATCCAGAGAATTGCTTGAGGAGGTTGCTAGACAAGGAGAAATAACTGGTTATAGAGTTCCTTGCCTTCTTATTGCTGCTAAGGATGATTTAACTCCATACCCAAGGGCAGTACAAGATTCAGTTAAGGTTACTCAGAAATTGGGAATAGAGGCACCTATTCATGTAAGTATGAAGTTAGGCGACTCAAGTAATGTGTATGATAAGATTGTTAGTGCTTCAGAACACCCTCATTTGAGCATTCCTGAAACTGAGATTGGGAGGAAAAGAAAGCAATTCCATCAGCTTCTCCATCACTCTCTTATTTTTGCCTCCGTTGGGACTGCTGTGGCAGCGGCTGGTTTAGCAGCTTTTCGTGCATACGCAACGAGGAAAAAATCTCCAGCTTAG 1932 0.4343 MVDHSTVASRSGVRVAVVGDRGTGKSSLIAAAASESFPDTVPPVLPPTSLPDDWFPDHVPLTVIDTSSSLEKQGKRNEELKRADVVVLTYACDEPTSITRLSTYWLRELEKLEVKAPVIVVGCKLDLQDENQQVSLENLMSQLLQQFKAIPTCMECSAATLDQVPEVFYFAQKAVLHPIDPLFDYESQALTDRCLRALRRLFVLCDRDMDDALNDAELNDFQVRCFDTPLQPSEIVGVKTVVQQKVPEGVNGLGLTFPGFVYVNNMFLKKGRPETIWTILRKFGYDNDLKLRDDFLPVPSKLAPGQSVELTSEAVEFLNGIFRLLDSDRDRALRPAELDKLFSTAPESPWNDAPYKDATERTNSGYISLSGYLSQWALMTLLDPPRSLANLIYIGYSGNPAAALRVTRRRSVDRKKQKTERNVFQCYVFGSKNAGKSTLLYSLLGRNFSDNYTSTTIEQYAANVVELIGGTRKTLILREIPEDGVNKFLSNRDCLAACDVAVFVYDSSDEHSWKKSRELLEEVARQGEITGYRVPCLLIAAKDDLTPYPRAVQDSVKVTQKLGIEAPIHVSMKLGDSSNVYDKIVSASEHPHLSIPETEIGRKRKQFHQLLHHSLIFASVGTAVAAAGLAAFRAYATRKKSPA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3199 643 SUPERFAMILY EF-hand 187 379 IPR011992 -
Glsi02g3199 643 ProSiteProfiles Miro domain profile. 10 177 IPR020860 GO:0003924|GO:0005525
Glsi02g3199 643 ProSitePatterns EF-hand calcium-binding domain. 206 218 IPR018247 -
Glsi02g3199 643 FunFam Mitochondrial Rho GTPase 185 289 - -
Glsi02g3199 643 Gene3D - 488 588 IPR027417 -
Glsi02g3199 643 SMART rab_sub_5 13 178 - -
Glsi02g3199 643 PIRSF Miro 9 643 IPR021181 GO:0003924|GO:0005509|GO:0005525|GO:0005741|GO:0007005
Glsi02g3199 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 420 593 IPR027417 -
Glsi02g3199 643 Pfam EF hand associated 350 418 IPR013566 -
Glsi02g3199 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 13 210 IPR027417 -
Glsi02g3199 643 ProSiteProfiles Miro domain profile. 421 590 IPR020860 GO:0003924|GO:0005525
Glsi02g3199 643 SMART ras_sub_4 14 178 - -
Glsi02g3199 643 PANTHER RHO FAMILY GTPASE 425 583 IPR003578 GO:0005525|GO:0007264
Glsi02g3199 643 Gene3D - 185 289 - -
Glsi02g3199 643 PRINTS Transforming protein P21 ras signature 114 127 - -
Glsi02g3199 643 PRINTS Transforming protein P21 ras signature 153 175 - -
Glsi02g3199 643 PRINTS Transforming protein P21 ras signature 13 34 - -
Glsi02g3199 643 Gene3D - 9 180 IPR027417 -
Glsi02g3199 643 FunFam Mitochondrial Rho GTPase 488 589 - -
Glsi02g3199 643 Pfam EF hand associated 228 313 IPR013567 -
Glsi02g3199 643 Pfam Ras family 15 175 IPR001806 GO:0003924|GO:0005525
Glsi02g3199 643 Pfam Ras family 428 553 IPR001806 GO:0003924|GO:0005525
Glsi02g3199 643 FunFam Mitochondrial Rho GTPase 291 481 - -
Glsi02g3199 643 CDD Miro2 420 599 - -
Glsi02g3199 643 FunFam Mitochondrial Rho GTPase 10 180 - -
Glsi02g3199 643 Gene3D - 291 481 - -
Glsi02g3199 643 SMART rho_sub_3 15 178 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3199 Glsi-ChrGlsi02 80343811 80350143 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3199 5 641 EF-hand Containing Proteins AT3G63150 61.068 0.0 836