Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3190 ATGGATCTCCACCAGTCCCAAACCTCCGCTGCTAGACGGAGCTTGAAGCGGAAGCTGGAACAAGGATTCACAGAAGAAGGAGCAAATCAAGTGAGAGCCGATCGCAGAGTGTTGGTTCTCGAACCTCAAAAGACTCATCAGGATCTGTTGGGTGAAGTTACGTCACAAGTGGCCGTCCTCAACTCTGCCTTTTCGTCTTCTCAATCAGATCGTGTTGCGGCTAAGCGCGCCGTCCACGTCCTCTCTGAGCTCGCAAAGAATGAGGAAATTGTGAATGGTATAGTGGGCTGTGGAGCTGTTCCTGCCCTGGTGAGGCATCTACAAGCACCAGAACCATTGGGAGAAGGTGATGGTGTTCCCAAGCCTTACGAGCATGAGGTGGAGAAAGGATGTGCTTTCGTCCTTGGGCTTCTTGCTGTCAAACCAGAGCATCAACAGCTCATTGTTGATGCTGGAGCTTTGCCCTATCTTATAGATTTGTTAAAGAGGCACAAGACCAGTAGCAATTCTCGGGCACTTTCTGGTCTTATTAGGAGAGCAGCTGATGCGATAACAAACCTTGCACATGAAAATAGCAGCATTAAAACCCGTGTCAGGATGGAAGGTGGTATCCCTCCTCTTGTTGAATTGCTTGAATTCCTTGATGCAAAGGTACAAAGGGCAGCTGCAGGGGCTTTGCGAACTCTTGCATTTAAAAATGATGAAACCAAGAACCAGATTGTTGGATGCAATGCGTTACCCACTCTTATACTAATGCTTCGATCGGAGGATGCTGCAATACATTACGAAGCAGTTGGAGTGATTGGAAATCTGGTCCACTCTTCCCCAAATATAAAGAAGGAAGTTCTTCTGGCCGGGGCTCTGCAACCTGTCATTGGATTACTAAGTTCTTGCTGTTCGGAGAGTCAAAGAGAAGCGGCTCTTTTACTTGGGCAATTTGCTGCAACAGATTCAAATTGCAAGGTTCACATTGCTCAAAGAGGAGCTATCCAGCCACTAATTGACATGCTTAAGTCTCCAGACGCACAGCTTAGGGAAATGTCGGCTTTTGCGCTTGGGAGGTTGGCACAGGACACACACAATCAAGCCGGTATTGCTCATAATGGAGGTATAGAGCCTCTTCTCAACCTTCTTGGATCAAAGAATGGATCTCTCCAACATAATGCAGCCTTTGCTCTATATGGTCTTGCTGATAATGAGGACAACGTTGAGGATATTATTAAGGTTGGTGGTGTTCAAAAACTACAGGATGGAGATTTCAAAGTTCAACCTACTAAAGAGTGTGTAGCAAAGACACTGAAAAGATTAGAGGAGAAGATGCATGGGCGAGTGCTGGAACAATTGTTGTATCTTACGCGTTTTGCAGAAAAGGCTGTTCAAAGACGCGTGGCTCTGGCTCTTGCTCATTTATGTGCCCCTGACGATCGCAAATTAATTTTCATTGACAACAATGGACTTGAATTGCTGCTGGATCTTTTGGAGTCTACAAACCACAAGCAGAAACGTGATGCTTCAGTGGCGCTTCACACGTTGGCTACAAAAGCCACATCTGTCTCTCCTGTTGATTCTGCTCCTCCATCCCCGACTCCCCAGGTATACTTGGGCGAGCAATATGTAAACAATCCTACACTTTCCGATGTCACATTTTCAGTTGAAGGTAAACGTTTCTATGCTCACAGAATTTGTCTACTTGCTTCTTCTGACATGTTTCGTGCAATGTTTGACGGTGGTTACAGGGAAAGGGAAGCCAAAGATATAGAGATTCCAAATATTAAATGGGATGTCTTTGAGTTGATGATGAGATTCATATACACAGGAACAGTAGATGTCAATTTAGATATTGCTCAGGATCTCCTCAGAGCTGCTGATCAGTATCTTCTTGAGGGTCTTAAGCGTCTCTGTGAATATGCGATTACTCAGGATATTTCCGTGGAAAATGTTTCACTAATGTACGAGTTATCAGAGGCATTCAATGCTGTGTCATTAAGGCAAGCATGCATACTATTTGTATTGGAGGAATTTGACAAACTGAGCGCTAAACCATGGTATTGCCGTCTGATACATTGCATTGTACCAGACATACGCCGATTTTTCGGAAGTTTACTTACCAAGTCTACCCCAGCTGACTTGTATATGGGTAGCATTGGTTCCGAGATTCCTGAAGCCATTGTGTTGGTGGCGCTCAAACAATTTTGGGTTGACAATTGA 2208 0.4493 MDLHQSQTSAARRSLKRKLEQGFTEEGANQVRADRRVLVLEPQKTHQDLLGEVTSQVAVLNSAFSSSQSDRVAAKRAVHVLSELAKNEEIVNGIVGCGAVPALVRHLQAPEPLGEGDGVPKPYEHEVEKGCAFVLGLLAVKPEHQQLIVDAGALPYLIDLLKRHKTSSNSRALSGLIRRAADAITNLAHENSSIKTRVRMEGGIPPLVELLEFLDAKVQRAAAGALRTLAFKNDETKNQIVGCNALPTLILMLRSEDAAIHYEAVGVIGNLVHSSPNIKKEVLLAGALQPVIGLLSSCCSESQREAALLLGQFAATDSNCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAHNGGIEPLLNLLGSKNGSLQHNAAFALYGLADNEDNVEDIIKVGGVQKLQDGDFKVQPTKECVAKTLKRLEEKMHGRVLEQLLYLTRFAEKAVQRRVALALAHLCAPDDRKLIFIDNNGLELLLDLLESTNHKQKRDASVALHTLATKATSVSPVDSAPPSPTPQVYLGEQYVNNPTLSDVTFSVEGKRFYAHRICLLASSDMFRAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGTVDVNLDIAQDLLRAADQYLLEGLKRLCEYAITQDISVENVSLMYELSEAFNAVSLRQACILFVLEEFDKLSAKPWYCRLIHCIVPDIRRFFGSLLTKSTPADLYMGSIGSEIPEAIVLVALKQFWVDN 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 202 237 IPR000225 GO:0005515
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 369 411 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 473 513 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 141 189 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 358 398 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 317 357 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 233 273 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 191 231 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 87 140 IPR000225 GO:0005515
Glsi02g3190 735 SMART arm_5 275 315 IPR000225 GO:0005515
Glsi02g3190 735 SUPERFAMILY ARM repeat 70 512 IPR016024 -
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 98 153 IPR000225 GO:0005515
Glsi02g3190 735 CDD BTB_POZ_ARIA_plant 532 647 - -
Glsi02g3190 735 Gene3D - 13 357 IPR011989 -
Glsi02g3190 735 Gene3D - 440 521 IPR011989 -
Glsi02g3190 735 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 5 706 IPR044282 -
Glsi02g3190 735 Pfam Armadillo/beta-catenin-like repeat 233 272 IPR000225 GO:0005515
Glsi02g3190 735 Pfam Armadillo/beta-catenin-like repeat 198 230 IPR000225 GO:0005515
Glsi02g3190 735 SMART BTB_4 545 642 IPR000210 GO:0005515
Glsi02g3190 735 ProSiteProfiles BTB domain profile. 545 612 IPR000210 GO:0005515
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 244 286 IPR000225 GO:0005515
Glsi02g3190 735 Gene3D - 358 439 IPR011989 -
Glsi02g3190 735 MobiDBLite consensus disorder prediction 1 21 - -
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 152 202 IPR000225 GO:0005515
Glsi02g3190 735 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 328 370 IPR000225 GO:0005515
Glsi02g3190 735 Gene3D Potassium Channel Kv1.1; Chain A 536 680 IPR011333 -
Glsi02g3190 735 Pfam BTB/POZ domain 538 640 IPR000210 GO:0005515
Glsi02g3190 735 SUPERFAMILY POZ domain 536 640 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3190 Glsi-ChrGlsi02 80287332 80294885 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3190 295 515 U-box Gene Family AT2G23140 27.826 2.65e-10 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Glsi02g3190 BTB 1.2e-26 CL0033