Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3163 ATGAGAGGGGCTCTGAGATATCGCACGCGATTTGGTAAGCAGGATCAAGACGAGGTTTCTCGAAATAGAGTTGTTCAGAAGAAAGGGGATGATTTGCATGATGAGGTTTTGGCGCATGAAAAAGAAGCGTTAAACTTGACAATTGAGAATGAGGAAGTGAAGCCAATCTTTCAACAAGCATGTGACTTAGATTGGGATATGGGTAAGAGTGAAACTGTTGGCTTAGCTGAGAATAGGAGCAAAATGAGTAGTTTAAGCTGTGGCGATTGCATTGAAGGATTTGACATTGAGAAGGAGGTCAAGAAGAGAGATGATTCAAATGATAAAGTGCAGTTTGGTGGTCGAGTTTTGCGCTCAAGGTCAAAGAGAGATGACAATAAGATATCCAATAATGGAGAAATCGATGGTATGTTGAGTGGGAAAAGTAGAGAGCACGAACACGATCAGTTTGAGAGGAGAGAGTTAAGCGAAGAAAAGGGACAAGTTGATGAATTTGTTAGTAATAGTTATGAGAAGGAAGGGGTTCAGGTGAAAATGGAAGGCAATGACATAAGGAAGTTGAAACGGAAGCGTGGGAGGCCCCCCAAAATGAAGATGAAAGAGCAAGATCAATTAGTTGGTGATATTTGTCAGAGGGAAGGGGTTCAGGTGCAAAAGGAAGGCAATATCGTAAGGGAGTTGAAACGGAAGCGAGGGAGGCCCCCCATAACGAAGATGAAAGAGCAAGGCCAATCAGTTAGTCAAAAAATGCAACGCAAGCGTGGAAGGCCCCCCATGGCCAAGGCTGGGCAAAATTATAACCTTCTGAAAGAAGCACATAATGGAAAAGGAAGGGTGGGCTTTCGAAAAGGTAAGAAAGGTTTAACTATGAGAGATGGTACAAATATGGATGCAATTGATGATATATGCCCAAAAAGGAGATCTTCCGTGAGATGTTCTCTTGTAAAGAAGAGTGAATCTGTGAAATTGAGATCAAATTCTGTGGATACTCTTGTTGCTGAGAAAAGTCGAAAGAGTAAAGAGAAAAGTCGAAAGAGTAAAGAGAAAAGTCAAAAGAGTAAGGAGAAGCAGTTAGTGAGGGAAAACATTATGAAATTACTCTTGGCTGCAGGCTGGGAAGTTGAATATAGACCTAGGAATGGCAAAGTGTATAATGATGCAGTGTATGTTAGTCTAGATAGAAAGACTCACTGGTCAATTACCTTGGCCTACAAAAGGCTTCAAAAGCATTCTGAAGCTGGTGATGGTGAAGGTAAGGTATACAGGCCAGGTTTCAAATTTACACCAATATCAGAGGAGGAATTCAAGATACTAACTAAGGTAATGAAGAAGAAAAGGAAAAGTAAGGAGAAATTGAAGCAAAAAGGAGGAAGAGGTGGAAATGCAGTTGATGGAGTCAATAAAAAAGTGAAGACAGAAAAACTAGGTTCTGTTGCAGGCTTCAGTAAGTCAATGAAGGGGAAAACGAAAAGGAAATGGTCGCTTGTTCGGGAGGACAATCCAGAATTTACATCACATAAAAGGTTTTCAGTTCTGGTCAAAGATCATAAGCGACCAAAAACACAAGACAAGAAGCGTTGTGCTTTGATGGTTCGCAATGCTGAGAAGGAGATAGATTCAGAAATTGATGGATATGTACCTTACAACGGAAAGCGAACTGTGCTTGCCTGGATGATTGATTTGGGAACAGTCCTGCAAAATGGCAAAATTCATTATATGAACCACAAAAGGACAGGTGTAACACTGGAGGGTAGGATCACAGGAGATGGAATTCATTGTGACTGCTGTAATAAAATTGTTACAATTTTAGAATTTGAAGCCCATGCAGGAAGCAGCCTCTCTGATCCACTTAAAAATATTTATACAGAGGGAGGAGCTTCCCTTTTGCAATGCCTGCTAGACTCATGGAATAAACAAGATGAATATGAGCGTAAAGGTTTTAATTCCATTGATACTACAGGTAAAGACCCTAATGATGATACATGTGGTGTCTGTGGAGATGGTGGAGACCTGATCTGTTGTGATGGTTGCCCATCAACATTCCATCAAAGCTGCCTGGATATTAGAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGCTGTTGCAAATTTTGTGGGTTGGCTGGTGGAAGTACAAACCAAAGGGATGGCCATGATGATTTTACTGCATCTGCATTACTTACATGCCGTTTATGCGAGCAAAAATATCACAGATCCTGCATTGAGGTAAACGGTTCCAAGACTGATGACTCCAGTGATGCATTCTATTGTGGAAGCAGATGTCAGGAGTTATCTGAGAGACTTGAAATGCTTATTGGGGTTAAACATGATATTGAAGATGGATTTTCTTGGACTTTTATTCGCCGGTCAGGTGTTGGCTCTGATGCTTCCCAGATACAATCTCAAATGGTTGAATGTAATTCCAAGCTAGCTGTTGCATTATCAGTAATGGATGAGTGCTTCATGCCTTATATTGATCATAGAAGTGGGATTAATCTAATCCACGGTATTCTTTATAATTGTGGGTCAAACTTCAGACGCCTGAACTATAGTGGTTTTATTACTGCAATTCTTGCGAGAGGTGATGAGATTGTCTCTGCCGCATCTATTAGGATCCATGGGAACCAACTAGCAGAGATGCCATTTATTGGGACCCGCTATATGTATAGGCGGCAAGGAATGTGCCGTCGGCTTCTAAGTGCCATTGAATTGGCACTCAGCTCTCTTAACATTGAGTTATTGGTCATACCAGCAATTTCAGAACTTAGGGAAACTTGGACTTCTGTTTTTGGGTTTGAGCCACTCGAGGTGGCAAGGAAGCAAATAATAAAGAACATCAATCTGTTGGTATTCCCTCATGTAGATATGTTACAAAAAAAAATAGTGAAGCCTAAAGCTGTTGATGAAAATCTTATTCCTACAGAAGTTTCCAATCCTCAACTGCAGAAGAATCAGACTACACATGAGGAAGCAACTAATTGTGATGAAGTCGGTTCATTTGGATCTGATTTGATCACTTCCGCCAGGAGTGTGATCCCTGCCTTGAATATATGCCAGATAAATGATAAACCTGTGTCTATTAAATCTGGTTCTCAGGTTCCTGATGGTTTATCTAACAACACACATGACAGTATTAGTAAGACTACAAATCACAATACATGTCCAAATGATGTAAAATTTCAAGCTGTATGTCATGCAATCAATGATAATTTGATAGTAAAAGACAAAACTACTGTAAATGCACATGATTACGTGAGTGTTGTTCATCGCCAAGATGAAGAGATAAATATGAGTCGGAATACTGGATCTGGTTGCATCATACTGGCACATGATGAAAAGACAGTAGGTTTAGATAACCAATTGAAAAATTGTTGTGTCTCTGAGGAGGAAAGGCAAAATCTCAGAGTGTCTCATATCAACTCCAAAGCTACTGAAGGAGAAGGACGTTATGTTGGTGCTTCCTCAGAGGGTACTGATACTATTCCCGTTGGAGAAGTAGCAGCGGATGACATGGTTACAAGTAACAACAGTGCTGAGGACTGTCCACACTTGGCAGAAAGTATTCCTCCTAAATCCCATAATGCATTTTGTACAAGGGAATTAAAATGTTCTGCTGACATTCTCTGCCATGATTCAAAGAGTTCAATTCCATCTGCACTTGATACAGGAACTAGTACTGTGCACTGTGGTTCTCAGAAGTTGCAGGTTGGAGAATGTGCTTCTGGTTCACTTAAGAATCTTGACAGTGTTGAACTGAGAAGCAATCTTGAGTGTGTTCAGCCTTATTCCATTGGATCAAAAGAAGTGAATTCTGAATCTATCTATGGTTGTGGTTCTCAGTGTAGACCCGATGATGAATGTGTCCCTAGTGAAGTGGTTATTCCAACTTGCTTCTTGACACACCTTAGAGATTGCCAATACCTAGAGGTAGCTTCAGGTTCTTGTGAGGAGATTGCAAATGGTGCCAATGAGAGGAGTGAAGCAACCAGTGCAGCTGAGTCCAATTCCCTTCCAGCTGATAGGAATTTAGATCTTAATGATAATCCATGGATGAAGCAGTCTTCAGAGCTGACTGAGCTTGATTTACAGGTTGATCAAACTTCAAGGAGTAATGCTCCATCTTTGTGTAGCCCAACCACCGCTTCTGGCGTGGCTCTTCACTGTACATCCGCTAGTGGTACTTCATGTAGTAATACTGAAGCAATAGTTCTGTCAAACCAAGCCAGTTGA 4233 0.4092 MRGALRYRTRFGKQDQDEVSRNRVVQKKGDDLHDEVLAHEKEALNLTIENEEVKPIFQQACDLDWDMGKSETVGLAENRSKMSSLSCGDCIEGFDIEKEVKKRDDSNDKVQFGGRVLRSRSKRDDNKISNNGEIDGMLSGKSREHEHDQFERRELSEEKGQVDEFVSNSYEKEGVQVKMEGNDIRKLKRKRGRPPKMKMKEQDQLVGDICQREGVQVQKEGNIVRELKRKRGRPPITKMKEQGQSVSQKMQRKRGRPPMAKAGQNYNLLKEAHNGKGRVGFRKGKKGLTMRDGTNMDAIDDICPKRRSSVRCSLVKKSESVKLRSNSVDTLVAEKSRKSKEKSRKSKEKSQKSKEKQLVRENIMKLLLAAGWEVEYRPRNGKVYNDAVYVSLDRKTHWSITLAYKRLQKHSEAGDGEGKVYRPGFKFTPISEEEFKILTKVMKKKRKSKEKLKQKGGRGGNAVDGVNKKVKTEKLGSVAGFSKSMKGKTKRKWSLVREDNPEFTSHKRFSVLVKDHKRPKTQDKKRCALMVRNAEKEIDSEIDGYVPYNGKRTVLAWMIDLGTVLQNGKIHYMNHKRTGVTLEGRITGDGIHCDCCNKIVTILEFEAHAGSSLSDPLKNIYTEGGASLLQCLLDSWNKQDEYERKGFNSIDTTGKDPNDDTCGVCGDGGDLICCDGCPSTFHQSCLDIRKFPSGDWHCIYCCCKFCGLAGGSTNQRDGHDDFTASALLTCRLCEQKYHRSCIEVNGSKTDDSSDAFYCGSRCQELSERLEMLIGVKHDIEDGFSWTFIRRSGVGSDASQIQSQMVECNSKLAVALSVMDECFMPYIDHRSGINLIHGILYNCGSNFRRLNYSGFITAILARGDEIVSAASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLSAIELALSSLNIELLVIPAISELRETWTSVFGFEPLEVARKQIIKNINLLVFPHVDMLQKKIVKPKAVDENLIPTEVSNPQLQKNQTTHEEATNCDEVGSFGSDLITSARSVIPALNICQINDKPVSIKSGSQVPDGLSNNTHDSISKTTNHNTCPNDVKFQAVCHAINDNLIVKDKTTVNAHDYVSVVHRQDEEINMSRNTGSGCIILAHDEKTVGLDNQLKNCCVSEEERQNLRVSHINSKATEGEGRYVGASSEGTDTIPVGEVAADDMVTSNNSAEDCPHLAESIPPKSHNAFCTRELKCSADILCHDSKSSIPSALDTGTSTVHCGSQKLQVGECASGSLKNLDSVELRSNLECVQPYSIGSKEVNSESIYGCGSQCRPDDECVPSEVVIPTCFLTHLRDCQYLEVASGSCEEIANGANERSEATSAAESNSLPADRNLDLNDNPWMKQSSELTELDLQVDQTSRSNAPSLCSPTTASGVALHCTSASGTSCSNTEAIVLSNQAS 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3163 1410 Pfam Tify domain binding domain 584 633 IPR032308 -
Glsi02g3163 1410 ProSiteProfiles Zinc finger PHD-type profile. 659 704 IPR019787 -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 1330 1350 - -
Glsi02g3163 1410 SMART PHD_3 703 763 IPR001965 -
Glsi02g3163 1410 SMART PHD_3 661 702 IPR001965 -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 138 159 - -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 329 356 - -
Glsi02g3163 1410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 649 717 IPR013083 -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 331 356 - -
Glsi02g3163 1410 SUPERFAMILY FYVE/PHD zinc finger 654 707 IPR011011 -
Glsi02g3163 1410 PRINTS AT-hook-like domain signature 226 237 IPR017956 GO:0003677
Glsi02g3163 1410 PRINTS AT-hook-like domain signature 188 198 IPR017956 GO:0003677
Glsi02g3163 1410 PRINTS AT-hook-like domain signature 249 259 IPR017956 GO:0003677
Glsi02g3163 1410 PANTHER PHD FINGER PROTEIN 12 319 1052 IPR042163 GO:0003714|GO:0045892
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 105 130 - -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 229 261 - -
Glsi02g3163 1410 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 802 962 IPR000182 GO:0016747
Glsi02g3163 1410 SMART AT_hook_2 188 200 IPR017956 GO:0003677
Glsi02g3163 1410 SMART AT_hook_2 251 263 IPR017956 GO:0003677
Glsi02g3163 1410 SMART AT_hook_2 228 240 IPR017956 GO:0003677
Glsi02g3163 1410 CDD PHD1_AIRE 662 701 - -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 446 465 - -
Glsi02g3163 1410 MobiDBLite consensus disorder prediction 105 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3163 Glsi-ChrGlsi02 80023118 80033147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3163 186 969 PHD Transcription Factor Family AT5G36670 41.493 0.0 614
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3163 02 80023118 80033147 Glsi11g0640 11 4022101 4030892 CCT
Glsi02g3163 02 80023118 80033147 Glsi02g3163 02 80023118 80033147 ECH