LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi02g3144	ATGGCTATTGACCATGGCTTCAACGCGGAGGTTGAAAGTCCTGTCATGGCTCAGAAATTGAGTAAGTCCATGGAAGACGCTGTCATGGATAAACATAAACTTAACTCCCACGAGAAGAGCTTGGGTTCAAAGGTAAGTTTAGGCAACAAAGGAATGTATATGAGAGTTGATAAGATTGATTTCAAGAGCTGGGATATTCAACTGGAGAAGCACCTGACCCAGGCCTATTGTGTAGTTGAGTATGTTCCTGGTGGGACGCTGAAGAAGTTTTTGATCAGAAATAGAAGGAAAAAACTTGCTTTTAAGGTTGTGATTCAACTTGCTTTGGACCTCTCCAGAGGGATTGTGCATCGTGATGTAAAGACAGAAAATATGTTGTTGGATGCCCGTAGAACTGTAAAAATTGCTGATTTCGGTGTTGCTCGAATTGAAGCTGAAAACCCAAAGGACATGACCGGAGAAACTGGTACCCTTGGTTACATGGCGCCAGAGGTTCTTGATGGTAAACCTTACAATAGGAAATGTGACGTTTATAGTTTTGGTATATGTTTGTGGGAGATCTATTGCTGCGATATGCCATATACTAATCTTAGCTTTGCTGATGTATCATGTGGAGTTGTCCGACAGAATTTACGCCCAGAAGTCCCAAGATGTTGCCCTAGTTCACTTGCAAGCATCATGCGAAAATGTTGGGATACAAACCCAGATAAGCGCCCCGAGATGGATGAAGTAGTGAGGTTGTTAGAGGCTATAGATACAAGTAAAGGAGGTGGCATGATACCAGAAGATCAAGCAACTGGCACCTGGGCTACCGGGCATTTTCAGAAGAGTGGAAATCCGAATGTTGTGCTGGGCCACCCAAATTCGGAGGATGGTTCCGGTGCAATGCATGGAGAGCGAGTCAGAGTGTTAAACTTGAGTAAGAGGGAGGTTTCTGGTATCAGCATTCTGGGCTCCACTCGACCTAAAACGCACTTATCGAACTTGCTAGAACCTCTAGGTTAG	1005	0.4428	MAIDHGFNAEVESPVMAQKLSKSMEDAVMDKHKLNSHEKSLGSKVSLGNKGMYMRVDKIDFKSWDIQLEKHLTQAYCVVEYVPGGTLKKFLIRNRRKKLAFKVVIQLALDLSRGIVHRDVKTENMLLDARRTVKIADFGVARIEAENPKDMTGETGTLGYMAPEVLDGKPYNRKCDVYSFGICLWEIYCCDMPYTNLSFADVSCGVVRQNLRPEVPRCCPSSLASIMRKCWDTNPDKRPEMDEVVRLLEAIDTSKGGGMIPEDQATGTWATGHFQKSGNPNVVLGHPNSEDGSGAMHGERVRVLNLSKREVSGISILGSTRPKTHLSNLLEPLG	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi02g3144	334	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	115	127	IPR008271	GO:0004672\|GO:0006468
	Glsi02g3144	334	Gene3D	Transferase(Phosphotransferase) domain 1	63	255	-	-
	Glsi02g3144	334	PRINTS	Tyrosine kinase catalytic domain signature	219	241	IPR001245	GO:0004672\|GO:0006468
	Glsi02g3144	334	PRINTS	Tyrosine kinase catalytic domain signature	79	92	IPR001245	GO:0004672\|GO:0006468
	Glsi02g3144	334	PRINTS	Tyrosine kinase catalytic domain signature	175	197	IPR001245	GO:0004672\|GO:0006468
	Glsi02g3144	334	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	76	251	-	-
	Glsi02g3144	334	SUPERFAMILY	Protein kinase-like (PK-like)	73	248	IPR011009	-
	Glsi02g3144	334	ProSiteProfiles	Protein kinase domain profile.	1	251	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi02g3144	334	Pfam	Protein tyrosine and serine/threonine kinase	74	248	IPR001245	GO:0004672\|GO:0006468
	Glsi02g3144	334	SMART	serkin_6	39	251	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi02g3144	Glsi-ChrGlsi02	79933498	79938019	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi02g3144	67	269	MAP Kinase Kinase Kinase	AT3G22750	76.056	3.32e-120	349

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-4	Glsi02g3144		PK_Tyr_Ser-Thr	2.1e-42	CL0016