Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3141 ATGGAGCAATATGAAATTCTAGAACAGGTTGGTAAAGGTTCCTTTGGTTCTGCTCTGCTTGTGAGGCACAAGCATGAAAAGAGAAGGTATGTCCTCAAGAAGATCCGCCTTGCCCGCCAAACTGATAGAACCCGTAGATCTGCCCACCAGGAGATGGAACTCATCTCTAAAGTACGAAATCCATTTATAGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTTTGCATCATCATAGGCTATTGTGAAGGAGGAGACATGGCTGAAGCTATAAAAAAGGCTAATGGCGTTCATTTTGCTGAAGAGAAGCTTTGTAAATGGCTAGTTCAACTCCTGATGGCGCTTGATTACTTGCATGCAAACCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGACATACGTCTAGGTGATTTTGGCCTAGCTAAATTGTTGACTTCCGATGATCTTGCTTCCTCAGTTGTTGGGACTCCGAGTTATATGTGCCCTGAACTTCTTGCTGATATACCCTATGGCTCTAAGTCAGATATCTGGTCTTTGGGTTGTTGTGTATATGAAATGGCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCTTTAATTAACAAAATAAACAAGTCAATAGTGGCTCCACTTCCAACCATGTATTCTGGTGCTTTTCGAGGACTTGTCAAAAGTATGCTACGGAAAAATCCAGAGCTTAGACCAAGTGCTGCAGAGTTACTAAATCATTCGCATCTTCAGCCTTACATTCTTAAAATTCACCAAAAACTAAATAGACCTAGAAGAAGTACTTTTCCATTCCAATGGCCTGAGTCAAACTACGTAAGGAGAACTCAGTTTGTGGAGCCAGAATCTGTCTCTACTCTTTCTGATATAGATAAACGATCATCATTCAGCAATGACAGGGCTTTGAATCCTAGTATTTCTGGAACAGAGAAAGATTCTCAGTGTTCTTCTACTCACAATGCACATGGATTTTCCACTAGTTCAAAGGAGAAACTCTATGAACTATCTGTTGGCTGTGTCCGTGAAGAATGCATATCTAACAAGTTAAAAGCCACAAAATTCTCAACTGTTGATAGTACTCCAAGATCGAGAGCAGTTAAGGATTCTGCCACCCCCAGAAGGAAGATAACACCAAAAATATCTCATACTGTTTCAAAGCGTGATTCACTTCCGGTGTGTCATACTCCAGCTGGAAATTGCTCCCCACCAACACGTAGAGCATCCCTTCCACTGCCAACAAGAGTCGTGGGCACAGCAACCCCTTATAGAGCAAATGCTGGCCTCCTCCGAAGTGTGGAGTCTCCAGATGTTTCTGTTAATGCGCCGCGAATTGACAAGATTGCAGAATTCCCTCTGGCTTCTTCTGAGGATCCTCTCTTCACCATCCCCAGAACGTCATCAACATCCGCACGGTGCTATTCTAGTTCACCAGGGAGTGCTAACTTCTCAATCACAAAGGACAAGTGTACAATCCAGGTTGTGGACAAAGCCATAGCCCCTACTACTGTCAGTGATGCTTGTCCTGGAGCTCCAGGATATGGAAGAGAATGCTCTGAGCATGTTACAACTGGTGTTTCGAGCCATTCCTCTGCAGAGTCACGACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGTGCCGAGGCGTTGGAAGGTTTGCTTGAATTCAGTGCAAGGCTTCTACAACAACAAAGACTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGACCTGAGAAAGTTTCTCCAAGAGAAACAGCTATTTGGTTGACAAAGAGCTTCAAAGAAACTGTGGTCTAA 1842 0.4321 MEQYEILEQVGKGSFGSALLVRHKHEKRRYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVHFAEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSAAELLNHSHLQPYILKIHQKLNRPRRSTFPFQWPESNYVRRTQFVEPESVSTLSDIDKRSSFSNDRALNPSISGTEKDSQCSSTHNAHGFSTSSKEKLYELSVGCVREECISNKLKATKFSTVDSTPRSRAVKDSATPRRKITPKISHTVSKRDSLPVCHTPAGNCSPPTRRASLPLPTRVVGTATPYRANAGLLRSVESPDVSVNAPRIDKIAEFPLASSEDPLFTIPRTSSTSARCYSSSPGSANFSITKDKCTIQVVDKAIAPTTVSDACPGAPGYGRECSEHVTTGVSSHSSAESRQRRFDTSSYQQRAEALEGLLEFSARLLQQQRLEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3141 613 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Glsi02g3141 613 MobiDBLite consensus disorder prediction 309 338 - -
Glsi02g3141 613 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Glsi02g3141 613 Gene3D Transferase(Phosphotransferase) domain 1 86 330 - -
Glsi02g3141 613 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3141 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Glsi02g3141 613 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 569 - -
Glsi02g3141 613 MobiDBLite consensus disorder prediction 533 553 - -
Glsi02g3141 613 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Glsi02g3141 613 SMART serkin_6 4 262 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi02g3141 613 SUPERFAMILY Protein kinase-like (PK-like) 1 321 IPR011009 -
Glsi02g3141 613 CDD STKc_Nek 3 258 - -
Glsi02g3141 613 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Glsi02g3141 613 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3141 Glsi-ChrGlsi02 79903423 79908122 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3141 10 259 MAP Kinase Kinase Kinase AT1G53570 30.588 4.96e-36 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Glsi02g3141 Pkinase 4.9e-63 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3141 02 79903423 79908122 Glsi02g3141 02 79903423 79908122 ECH