Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3128 ATGAATTATCTGTACACAGTGAAAGAAGAGTACTTGGAACCGTCTTCATCTCAACCAGGAGGTGAGCTAGCGACGGTTTCTCCTCCACAGCCAATGGAGGGACTTCATGACATAGGACCGCCGCCATTCCTCACGAAGACGTTCGATGTGGTGGACGACCCAACAACCAACCACGTAGTTTCGTGGAGCAGAGGCGGTACAAGCTTTGTGGTTTGGGATCCACATGCCTTCTCTACCAATCTCCTTCCTAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCAGGCAATTAAACACTTACGGTTTTCGAAAAATTGATCCAGATATATGGGAGTTTGCAAATGAAGGATTCCTGAGAGGGCAGAGGCATCTTTTGAGGAACATAAGGAGAAGAAAGGCAGCTTCTCAGCCTACTACTTCCGTACAAGCAATTAGTCATTGTGTTGAAGTTGGCCGGTTTGGAGTAGATGAAGAAATCGGTCGTTTGAGGCGCGACAAGCAAGTGTTAATGATGGAGCTTGTCAAGCTTAGACAGCAGCAACAGAATACCAGAGCCTACCTTCAGGCTATGGAGCAAAGGTTAAAAGGCACAGAAATGAAGCAGCAACAGATGATGGCTTTCTTAGCCAGAGCTATGAAAAACCCAGCTTTTCTACAGCAACTACTTCAACAGAGAAAGAGAAAGGAGCTAGAAGGAGCCATGACAAAAAAGAGGAGGAGGCCAATTGAGCAAGGACCAAGTGAGGGAAGGAATATTCCCGTTAAAGTAGAGCCTTTAGATTTTGGGAATTACGGGTTTCAAGTGTCAGAGCTGGAAGTGCTAGCTATGGAAATGCAAGGTTTGGGTAGGGGTAGAAGAGAACAAGAGGAAGAACCGGAGGCACTAGAACCATCAGAGAGGCTGGACAAAGAACTTGATGAAGGGTTCTGGGAAGAACTGTTTAGTGAAGATTTTGAGGGGGAATTATTAGATATTCCAAGCGCTGAAGGTGAAGGTGAAGATGAAGATGTAGATGTCAAAGTCTTGGCCAATCGCTTAGATTACATGGATAAGGACTTGTTCCATGATACTGTCTTGGAATTTTGCACAGGAAACTATGGTGTTGTCTTATGGTCGAAGCAGGTTTTCTCTATCAATTTGATTATCTATGTAATTGACAAGCCAAATGTTTTGTGTGTAGTGATGCTGGATGACATTGTGGGGAGCAAGTTTAGGTGA 1221 0.4439 MNYLYTVKEEYLEPSSSQPGGELATVSPPQPMEGLHDIGPPPFLTKTFDVVDDPTTNHVVSWSRGGTSFVVWDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDIWEFANEGFLRGQRHLLRNIRRRKAASQPTTSVQAISHCVEVGRFGVDEEIGRLRRDKQVLMMELVKLRQQQQNTRAYLQAMEQRLKGTEMKQQQMMAFLARAMKNPAFLQQLLQQRKRKELEGAMTKKRRRPIEQGPSEGRNIPVKVEPLDFGNYGFQVSELEVLAMEMQGLGRGRREQEEEPEALEPSERLDKELDEGFWEELFSEDFEGELLDIPSAEGEGEDEDVDVKVLANRLDYMDKDLFHDTVLEFCTGNYGVVLWSKQVFSINLIIYVIDKPNVLCVVMLDDIVGSKFR 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3128 406 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g3128 406 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g3128 406 MobiDBLite consensus disorder prediction 234 255 - -
Glsi02g3128 406 Gene3D - 36 133 IPR036388 -
Glsi02g3128 406 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 249 IPR027725 -
Glsi02g3128 406 FunFam Heat shock transcription factor 1 36 133 - -
Glsi02g3128 406 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g3128 406 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g3128 406 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Glsi02g3128 406 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Glsi02g3128 406 Coils Coil 160 194 - -
Glsi02g3128 406 MobiDBLite consensus disorder prediction 283 302 - -
Glsi02g3128 406 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3128 Glsi-ChrGlsi02 79759630 79762624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3128 24 350 HSF AT3G22830 52.432 7.67e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Glsi02g3128 HSF_DNA-bind 1.9e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3128 02 79759630 79762624 Glsi11g0660 11 4155893 4157763 CCT