Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3127 ATGTTTCCCACAGCCATGTCCAATTCAACTTCTTTGTCCGACAAAGCCAGTTTCTCTTCTGGTACAAGAGTTCAGGACTTGGAAGGATTAAATCCCCTAGTCTCTACAATTTCTCCTCAAGAGCCTCAAAAGATTAAGAAAAAGAGAAGCCTCCCTGGAAACCCAGACCCAGATGCAGAAGTGATTGCGTTGTCCCCGAAGACACTTTTAGCCACTAATAGATTCGTGTGTGAGATCTGCAACAAGGGTTTTCAGAGGGACCAGAACCTTCAACTTCATAGGAGAGGCCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAGCAAAGAGGTTAAAAAGAGAGCCTACGTTTGCCCTGAACCTTCATGCGTTCATCACAACCCATCAAGAGCTCTGGGTGATCTTACAGGAATTAAGAAACACTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGACAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGAACTAGAGAATACAGATGTGATTGTGGAACTCTTTTCTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCAAGACTTTCAGCGAACCAATTAGCCTCCACAAACCCACTTGTTCAATCTCTCTTCCTTTACCCCAACGAACAGAACTTCCAAAACCACATCTCCCTGAATCCATGGGACCCATCTCAACAAAACCCTAACCCTAACAATGTTACCCCTATCCCTCACTTCCCTCCTACTGCTCTCCAAATCAAGCCCGAAGCTCAACATTTCCAGATCCCCACCCTTCCCTCTCCCTCTCACTCATTTCTTCACCAACCTCATCCCCACCACTCTGCCACCTCAGCACATCTGTCAGCCACTGCTCTCCTCCAAAAGGCTGCAACCGTTGGTGCCACTGTTGCCCAACAATCTCACTCAGTGGATCACGTGAACCAGCTTGGCATGCCCAAGTTCGGAAAGGTGAGTCAGCTCGACTCGGGGGTACCCGACTACATGAGGACCTTCACCACACGGAATCTGAAGAATGACCATCTGACGAGGGACTTTCTGGGTCTGACCGGCGATGCCAATGGCGGAGGGGACGGTGGGAATGGCGGCGCTGTTGACGTTAGCGTCAACATGAAGGATATGGTGACGTTCACGGGGAACGTAGAGTACCAACCATACGACCACCATCACCACTCGCTGTTCAAGTCCCGACAAGGTTTTGGATTCGTTGGGACAACCACTGCCCCTGAGACGTGGGGCAATTATTGA 1308 0.4893 MFPTAMSNSTSLSDKASFSSGTRVQDLEGLNPLVSTISPQEPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNSKEVKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCDKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLASTNPLVQSLFLYPNEQNFQNHISLNPWDPSQQNPNPNNVTPIPHFPPTALQIKPEAQHFQIPTLPSPSHSFLHQPHPHHSATSAHLSATALLQKAATVGATVAQQSHSVDHVNQLGMPKFGKVSQLDSGVPDYMRTFTTRNLKNDHLTRDFLGLTGDANGGGDGGNGGAVDVSVNMKDMVTFTGNVEYQPYDHHHHSLFKSRQGFGFVGTTTAPETWGNY 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3127 435 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Glsi02g3127 435 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Glsi02g3127 435 Gene3D Classic Zinc Finger 54 123 - -
Glsi02g3127 435 FunFam protein indeterminate-domain 12-like 54 122 - -
Glsi02g3127 435 MobiDBLite consensus disorder prediction 280 300 - -
Glsi02g3127 435 SMART c2h2final6 151 171 IPR013087 -
Glsi02g3127 435 SMART c2h2final6 75 97 IPR013087 -
Glsi02g3127 435 SMART c2h2final6 116 146 IPR013087 -
Glsi02g3127 435 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 35 387 IPR031140 -
Glsi02g3127 435 MobiDBLite consensus disorder prediction 1 59 - -
Glsi02g3127 435 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Glsi02g3127 435 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Glsi02g3127 435 MobiDBLite consensus disorder prediction 1 41 - -
Glsi02g3127 435 Gene3D Classic Zinc Finger 144 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3127 Glsi-ChrGlsi02 79751297 79754598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3127 15 424 IDZ Gene Family AT4G02670 51.945 2.58e-128 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi02g3127 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3127 02 79751297 79754598 Glsi11g0228 11 1536161 1539129 CCT