Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3110 ATGGGGCCCCCACCAAAAAAAAAAATCATTAATCGCGTTTCGCTACTTAAAAGGAAAACAGAGCAACTCTGGCAATTCGCGGGTCAGTGCCTCTGTTTGTCCCCGAAACTGTCGCACTCCTCTCTTGCGGTCTCGTCTGCGGCCATAGACCCTAACTTTGGTTCGTCAATGGATACGCACACGTCGCACGGTGCGGGACCCATTCGTTCCCGGAGTTCCCAATCCCATTCCCCTTCCCACTCGGCTTCGGCCTCTGCTACTTCCTCCATCCAAAAGCGTAAGCTAGCTTCTGAAGATCACGCGCCTCCCTTTCCACCCTCTTCCTTTTCCGCCGACACCCGTGACGGCGCTTTGACTTCCAATGACGACCTGGAAAGTATTTCTGCTCGAGGAGCTGATTCCGAATCCGACGACGACTCCGAGGACGCAGTGGTTGACGATGACGAGGAGGACTACGATAACGACTCCTCACTGCGGACCTTCACCGCGGTAAGGATTGAGAACACTGGTTCAGCTCCGCGGAACACGAAGATCAAAACGGATAATTCAACGGTCAAGATAGATAATTCCGATGGTGTGAAGGATGGTGGTACCGCTGGCACTGGTGCGGTCGGTACCACAGCCACTGGAAACTCCGTTCCGGGCATTGTGGTTAAGGAGGACACAACGAAGATATTTACCGATAATTTACAAACAAGTGGGGCTTATAGTGCGAGGGAAGAGAGTCTCAGGAAAGAGGAGGAAGCAGGAAGGCTCAAATTCGTATGCCTCTCAAATGATGGTATTGACGAACATATGGTTTGGTTGATAGGATTGAAGAATATTTTTGCTAGACAACTACCCAATATGCCAAAGGAGTATATCGTTCGACTTGTAATGGATAGGAGCCACAAGTCTGTCATGGTTATAAGACGTAATCATGTTGTTGGTGGCATCACATATCGCCCATATGTAAACCAAAAGTTTGGTGAGATAGCCTTCTGTGCAATAACTGCTGATGAGCAAGTGAAAGGTTATGGTACCAGACTGATGAATCACTTGAAACAGCATGCTCGAGATTTTGATGGGTTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGCTTTACGAAAGAGATCCATTTGGAGAAAGATCGATGGCAAGGGTATATTAAAGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTCCCTTACACTGATTTATCTACTATGATTTGTCGTCAAAGGCAGGCAATCGATGAAAAGATAAGAGAGCTGTCAAACTGTCACATTGTTTATCCTGGAATTGATTTTCAGAAGAAAGAAGCTGGTATTCCAAAAAAAATTCTCAAAGTTGAGGATATCCCTGGTTTGAGGGAGGCTGGATGGACTCCTGATCAGTGGGGTCATACACGATTTAGAAGTTTGAGTGCTTCTGCAGACGGTGGTACAAATCAAAAACAATTGACTGCGTTTATGCGATCTATTCTAAAGTCAATGCACGATCATGTTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGCGATGTTCCTGATTATTATGACATCATTAAAGATCCAATGGATCTGAAGACAATGTCAAAGAGGGTGGAATCTGAGCAATATTATGTTACATTTGAGATGTTTATTGCGGATGCTAGGAGAATGTTTGCCAATGCTCGCACTTATAACTCTCTGGATACTATTTATTACAAATGTTCTACGAGGCTTGAAGCCCATTTTCAAACCAAAGTTCAATCAGTTCTCCAATCTGCTAACAAAATTCAGTAG 1812 0.4481 MGPPPKKKIINRVSLLKRKTEQLWQFAGQCLCLSPKLSHSSLAVSSAAIDPNFGSSMDTHTSHGAGPIRSRSSQSHSPSHSASASATSSIQKRKLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSESDDDSEDAVVDDDEEDYDNDSSLRTFTAVRIENTGSAPRNTKIKTDNSTVKIDNSDGVKDGGTAGTGAVGTTATGNSVPGIVVKEDTTKIFTDNLQTSGAYSAREESLRKEEEAGRLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRSHKSVMVIRRNHVVGGITYRPYVNQKFGEIAFCAITADEQVKGYGTRLMNHLKQHARDFDGLTHFLTYADNNAVGYFIKQGFTKEIHLEKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMICRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKILKVEDIPGLREAGWTPDQWGHTRFRSLSASADGGTNQKQLTAFMRSILKSMHDHVDAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFIADARRMFANARTYNSLDTIYYKCSTRLEAHFQTKVQSVLQSANKIQ 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3110 603 SUPERFAMILY Bromodomain 481 596 IPR036427 GO:0005515
Glsi02g3110 603 CDD Bromo_gcn5_like 494 593 - -
Glsi02g3110 603 ProSiteProfiles Bromodomain profile. 507 578 IPR001487 GO:0005515
Glsi02g3110 603 SMART bromo_6 488 597 IPR001487 GO:0005515
Glsi02g3110 603 PRINTS Bromodomain signature 559 578 IPR001487 GO:0005515
Glsi02g3110 603 PRINTS Bromodomain signature 510 523 IPR001487 GO:0005515
Glsi02g3110 603 PRINTS Bromodomain signature 524 540 IPR001487 GO:0005515
Glsi02g3110 603 CDD NAT_SF 299 353 - -
Glsi02g3110 603 PANTHER GH11602P 105 599 IPR037800 GO:0004402
Glsi02g3110 603 MobiDBLite consensus disorder prediction 112 127 - -
Glsi02g3110 603 FunFam Histone acetyltransferase KAT2A 249 413 - -
Glsi02g3110 603 Pfam Bromodomain 500 582 IPR001487 GO:0005515
Glsi02g3110 603 Pfam Acetyltransferase (GNAT) family 299 377 IPR000182 GO:0016747
Glsi02g3110 603 MobiDBLite consensus disorder prediction 54 159 - -
Glsi02g3110 603 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 257 411 IPR016181 -
Glsi02g3110 603 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 252 406 IPR000182 GO:0016747
Glsi02g3110 603 MobiDBLite consensus disorder prediction 54 92 - -
Glsi02g3110 603 Gene3D - 248 412 - -
Glsi02g3110 603 Gene3D - 480 603 IPR036427 GO:0005515
Glsi02g3110 603 MobiDBLite consensus disorder prediction 135 154 - -
Glsi02g3110 603 ProSitePatterns Bromodomain signature. 512 570 IPR018359 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3110 Glsi-ChrGlsi02 79577873 79585961 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Glsi02g3110 Bromodomain 1.8e-19 No_clan