Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3104 ATGGAAAGCTATGAAAGGGAGCTCAATCTGAAGGCGACAGAGCTAAGATTGGGATTGCCAGGAAGCGATGAGCCAGGGAAACGTTCATGCAGTAGTTCTAGCGTTAGAAGCAATAAGAGATGTTGTCCGGAAGCAAGTGAGGAGGAGTCAGTAAGCAAGAGCGACGTTTGTAATGGTTCTGATGATGTTGATGACCAACACAACGCTCCTCCACCCGCCAAGGTGCAAGTAGTGGGATGGCCACCCATCCGATCTTACAGGAAGAATAGTGTACAACAGAAGAAGGTATCAGAAGAGGGAGATGGGGCTGGAATGTACGTTAAAGTGAGCATGCCCGGTGCACCTTATTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCACAACTCCTCAAGGCCTTGGAAAATATGTTCAACTGCACTTTTGGTGAATATTCAGAAAGAGAAGGCTACAATGGATCTGAACATGCTCCTACTTATGAAGACAAGGACGGTGACTGGATGCTGGTTGGAGATGTTCCATGGAATATGTTCATGTCCTCCTGCAAGAGGCTGAGAATCATGAAAGGATCAGAAGCTAAGGGGTTGGGTTGTTTATGA 603 0.4643 MESYERELNLKATELRLGLPGSDEPGKRSCSSSSVRSNKRCCPEASEEESVSKSDVCNGSDDVDDQHNAPPPAKVQVVGWPPIRSYRKNSVQQKKVSEEGDGAGMYVKVSMPGAPYLRKIDLKVYKSYPQLLKALENMFNCTFGEYSEREGYNGSEHAPTYEDKDGDWMLVGDVPWNMFMSSCKRLRIMKGSEAKGLGCL 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3104 200 ProSiteProfiles PB1 domain profile. 104 191 IPR000270 GO:0005515
Glsi02g3104 200 MobiDBLite consensus disorder prediction 41 62 - -
Glsi02g3104 200 SUPERFAMILY CAD & PB1 domains 99 190 - -
Glsi02g3104 200 MobiDBLite consensus disorder prediction 15 79 - -
Glsi02g3104 200 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 195 IPR003311 GO:0005634|GO:0006355
Glsi02g3104 200 FunFam Auxin-responsive protein 99 200 - -
Glsi02g3104 200 Pfam AUX/IAA family 13 198 IPR033389 -
Glsi02g3104 200 Gene3D - 98 200 - -
Glsi02g3104 200 MobiDBLite consensus disorder prediction 26 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3104 Glsi-ChrGlsi02 79548473 79549267 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3104 89 197 B3 DNA Binding Superfamily AT2G46530 35.780 3.60e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi02g3104 AUX_IAA 2.7e-58 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3104 02 79548473 79549267 Glsi02g3104 02 79548473 79549267 ECH