Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3103 ATGGAAGTTGGTCTGAAGAAGGAGAAGATGGGGTTCGAGGAAACAGAGCTGAGGCTTGGATTGCCTGGAAATGGAGGCACCGAAACAGAAGTGGCGAGGAAAAGAGGATTCTCTGAGACTCAGACTACCACTGTGGATTTGATGCTGAATCTGTCATCCAAGGAAGCAGGTGGTGGGGCAGATCCAAGTGACAACCTCAAGACTCCGCCTAAGGAGAAGAGCCTTTTGCCCGCCGATCCTGCCAAGCCTCCCGCCAAGGCCCAAGTGGTGGGTTGGCCACCAGTGCGATCCTTCCGAAAGAACATATTAGCAGTACAAAAGAGCAGCGGAGAAGATCAGAGCGAGAAAGGAAGCCCCAATGGAAGTTTTGTCAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAGGTGGACTTGAAGATGTACAGCACTTACCAAGACCTCTCTGATGCCTTAGGCAAAATGTTCAGCTCCTTCACCATCGGGAATTGTGGATCCCAAGGAATGATGGATTTTATGAATGAGAGTAAGCTGATGAATCTTTTAAGCAGCTCCGACTATGTCCCATCCTATGAAGACAAGGATGGAGACTGGATGCTTGTCGGTGATGTTCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGTATCATGAAAAGCAAGGAGGCTATTGGGCTTGCACCAAGAGCCATGGAGAAATGCAAGAACAGAAGCTAG 720 0.4917 MEVGLKKEKMGFEETELRLGLPGNGGTETEVARKRGFSETQTTTVDLMLNLSSKEAGGGADPSDNLKTPPKEKSLLPADPAKPPAKAQVVGWPPVRSFRKNILAVQKSSGEDQSEKGSPNGSFVKVSMDGAPYLRKVDLKMYSTYQDLSDALGKMFSSFTIGNCGSQGMMDFMNESKLMNLLSSSDYVPSYEDKDGDWMLVGDVPWEMFVESCKRLRIMKSKEAIGLAPRAMEKCKNRS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3103 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Glsi02g3103 239 SUPERFAMILY CAD & PB1 domains 112 220 - -
Glsi02g3103 239 FunFam Auxin-responsive protein 116 231 - -
Glsi02g3103 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 226 IPR003311 GO:0005634|GO:0006355
Glsi02g3103 239 MobiDBLite consensus disorder prediction 18 89 - -
Glsi02g3103 239 Gene3D - 116 233 - -
Glsi02g3103 239 MobiDBLite consensus disorder prediction 36 50 - -
Glsi02g3103 239 Pfam AUX/IAA family 14 230 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3103 Glsi-ChrGlsi02 79539777 79541786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3103 108 229 B3 DNA Binding Superfamily AT4G23980 32.787 4.17e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Glsi02g3103 AUX_IAA 1.5e-82 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3103 02 79539777 79541786 Glsi02g3103 02 79539777 79541786 ECH