Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi02g3094 ATGGCGAATCAGGTAGTCAAAGTGAGGAGGGAAACGATTGCAGCATGCATGACTTGCCCACTCTGCAATAAGTTGTTCCGGGAGGCCACCACTATATCTGAATGTCTTCATACGTTTTGCAGGAAGTGCATATATGACAAAATTACAGATGAGGAATTAGAATGCTGTCCAATTTGCAATATTGATTTGGGTTGTGTTCCACTCGAGAAATTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCTAAAATTTTCCCTTTAAAGAGAAGAAAGGTGAAGGCACCAGAAGTTGTCCACTCAGTAACATTACCAGCTAGAAGAAAGGAAAGATCACTTTCGTCTTTGGTTGTCAGCACTCCCAGAGTATCAACACAGGCAACCATGACAGGCAGAAGAACAAAACCTACAAGAAAGGCTAGTGCTCCACGGACCTGTTTTTCCATTGAAAAACCCATTATAAAAGAGGAAGATTCAGTGGAAGATCCTCCAGAGAGTTCAAGCTCGCCTGACACTTCAAACAAGTTTACACAGAGTATTGGACAGAGCTTGTCTCCTCATGGTGCTAGCCAATCTTTACCCAATAAGGAAACAGACAATGGGGCTGAACCATGGGAAGCAAAATTGGATCTCTGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAACTTGCAAGGTTGTGATGCTAAACTAGAACCCATGCAAGTAAATGAGAGTGATTCTCAAGTACATAAGTCCAAAAATAAGGAAAATAAACGAAAGGCAAAAGTTGAGGATGGAAAGATTGGAACAGATCTTGTCTCTTCAGATATAGCAAAACCCAATAAATTGCGCAGAATTCGCCGGAAAAAGGAACCTGTTTTTGGTGAATCAGCCATATCACCCCAAGCTGTGCTGGATGCAAACAGTGATAAACTGAAAACGAGAATTGGTCCAATATGGTTCTCCTTAGTAGCTGCTGAAGACCAGGGAGGAGATGCACCACTACCCCAAATTCCTGCAAGTTATTTAAGAATAAAGGATGGAAGCATACCTGTCTCATTTATCCAAAAATACCTAATGAAGAAACTAGATCTGACCAGTGAAGCAGAGGTTGAGATTAAATGTATGGGACAACCAGTGGTCCCCACATTACAACTGAATAATTTGATTGACTTGTGGCTGCAAACAGCATCCACATCACAGCGAATTCCAGCAGCCATTGGGTCCTCGGCAAAGGATTTTGTTATGGTCTTAGCCTATGCTCGGAAGGTCTCACCCCCTTGA 1287 0.4227 MANQVVKVRRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHSLQDVRAKIFPLKRRKVKAPEVVHSVTLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASAPRTCFSIEKPIIKEEDSVEDPPESSSSPDTSNKFTQSIGQSLSPHGASQSLPNKETDNGAEPWEAKLDLWKPLNCLVEVASRSKSFKSNLQGCDAKLEPMQVNESDSQVHKSKNKENKRKAKVEDGKIGTDLVSSDIAKPNKLRRIRRKKEPVFGESAISPQAVLDANSDKLKTRIGPIWFSLVAAEDQGGDAPLPQIPASYLRIKDGSIPVSFIQKYLMKKLDLTSEAEVEIKCMGQPVVPTLQLNNLIDLWLQTASTSQRIPAAIGSSAKDFVMVLAYARKVSPP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi02g3094 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Glsi02g3094 428 MobiDBLite consensus disorder prediction 112 201 - -
Glsi02g3094 428 MobiDBLite consensus disorder prediction 242 263 - -
Glsi02g3094 428 MobiDBLite consensus disorder prediction 164 197 - -
Glsi02g3094 428 SUPERFAMILY RING/U-box 14 83 - -
Glsi02g3094 428 SMART ring_2 19 59 IPR001841 -
Glsi02g3094 428 MobiDBLite consensus disorder prediction 249 263 - -
Glsi02g3094 428 MobiDBLite consensus disorder prediction 112 134 - -
Glsi02g3094 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Glsi02g3094 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Glsi02g3094 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 425 IPR044807 GO:0004842
Glsi02g3094 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Glsi02g3094 428 CDD RING-HC_PCGF 17 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi02g3094 Glsi-ChrGlsi02 79479592 79484599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi02g3094 2 347 C3H Transcription Factor Family AT2G30580 54.310 3.22e-111 328
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi02g3094 02 79479592 79484599 Glsi11g0694 11 4368366 4375557 CCT
Glsi02g3094 02 79479592 79484599 Glsi02g3094 02 79479592 79484599 ECH